Volume 2016, 2016
Can we replace curation with information extraction software?
Database, Volume 2016, 2016, baw150, https://doi.org/10.1093/database/baw150
Minimizing proteome redundancy in the UniProt Knowledgebase
Database, Volume 2016, 2016, baw139, https://doi.org/10.1093/database/baw139
TBro: visualization and management of de novo transcriptomes
Database, Volume 2016, 2016, baw146, https://doi.org/10.1093/database/baw146
iMITEdb: the genome-wide landscape of miniature inverted-repeat transposable elements in insects
Database, Volume 2016, 2016, baw148, https://doi.org/10.1093/database/baw148
Crowd-sourcing and author submission as alternatives to professional curation
Database, Volume 2016, 2016, baw149, https://doi.org/10.1093/database/baw149
Reefgenomics.Org - a repository for marine genomics data
Database, Volume 2016, 2016, baw152, https://doi.org/10.1093/database/baw152
The importance of digitized biocollections as a source of trait data and a new VertNet resource
Database, Volume 2016, 2016, baw158, https://doi.org/10.1093/database/baw158
HEDD: the human epigenetic drug database
Database, Volume 2016, 2016, baw159, https://doi.org/10.1093/database/baw159
viruSITE—integrated database for viral genomics
Database, Volume 2016, 2016, baw162, https://doi.org/10.1093/database/baw162
RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression
Database, Volume 2016, 2016, baw151, https://doi.org/10.1093/database/baw151
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges
Database, Volume 2016, 2016, baw161, https://doi.org/10.1093/database/baw161
Database Tool
ChemProt-3.0: a global chemical biology diseases mapping
Database, Volume 2016, 2016, bav123, https://doi.org/10.1093/database/bav123
ncRNA orthologies in the vertebrate lineage
Database, Volume 2016, 2016, bav127, https://doi.org/10.1093/database/bav127
HerDing: herb recommendation system to treat diseases using genes and chemicals
Database, Volume 2016, 2016, baw011, https://doi.org/10.1093/database/baw011
myPhyloDB: a local web server for the storage and analysis of metagenomic data
Database, Volume 2016, 2016, baw037, https://doi.org/10.1093/database/baw037
PmiRExAt: plant miRNA expression atlas database and web applications
Database, Volume 2016, 2016, baw060, https://doi.org/10.1093/database/baw060
CoReCG: a comprehensive database of genes associated with colon-rectal cancer
Database, Volume 2016, 2016, baw059, https://doi.org/10.1093/database/baw059
A web resource for mining HLA associations with adverse drug reactions: HLA-ADR
Database, Volume 2016, 2016, baw069, https://doi.org/10.1093/database/baw069
‘RE:fine drugs’: an interactive dashboard to access drug repurposing opportunities
Database, Volume 2016, 2016, baw083, https://doi.org/10.1093/database/baw083
GESDB: a platform of simulation resources for genetic epidemiology studies
Database, Volume 2016, 2016, baw082, https://doi.org/10.1093/database/baw082
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
Database, Volume 2016, 2016, baw084, https://doi.org/10.1093/database/baw084
SinEx DB: a database for single exon coding sequences in mammalian genomes
Database, Volume 2016, 2016, baw095, https://doi.org/10.1093/database/baw095
MODEM: multi-omics data envelopment and mining in maize
Database, Volume 2016, 2016, baw117, https://doi.org/10.1093/database/baw117
IRNdb: the database of immunologically relevant non-coding RNAs
Database, Volume 2016, 2016, baw138, https://doi.org/10.1093/database/baw138
ToxReporter: viewing the genome through the eyes of a toxicologist
Database, Volume 2016, 2016, baw141, https://doi.org/10.1093/database/baw141
Database Update
ScaleNet: a literature-based model of scale insect biology and systematics
Database, Volume 2016, 2016, bav118, https://doi.org/10.1093/database/bav118
Ensembl regulation resources
Database, Volume 2016, 2016, bav119, https://doi.org/10.1093/database/bav119
Ensembl comparative genomics resources
Database, Volume 2016, 2016, bav096, https://doi.org/10.1093/database/bav096
MGFD: the maize gene families database
Database, Volume 2016, 2016, baw004, https://doi.org/10.1093/database/baw004
Fish Karyome version 2.1: a chromosome database of fishes and other aquatic organisms
Database, Volume 2016, 2016, baw012, https://doi.org/10.1093/database/baw012
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins
Database, Volume 2016, 2016, baw021, https://doi.org/10.1093/database/baw021
The Disease Portals, disease–gene annotation and the RGD disease ontology at the Rat Genome Database
Database, Volume 2016, 2016, baw034, https://doi.org/10.1093/database/baw034
CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
Database, Volume 2016, 2016, baw038, https://doi.org/10.1093/database/baw038
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions
Database, Volume 2016, 2016, baw057, https://doi.org/10.1093/database/baw057
Integration of new alternative reference strain genome sequences into the Saccharomyces genome database
Database, Volume 2016, 2016, baw074, https://doi.org/10.1093/database/baw074
The Ensembl gene annotation system
Database, Volume 2016, 2016, baw093, https://doi.org/10.1093/database/baw093
HPIDB 2.0: a curated database for host–pathogen interactions
Database, Volume 2016, 2016, baw103, https://doi.org/10.1093/database/baw103
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions
Database, Volume 2016, 2016, baw132, https://doi.org/10.1093/database/baw132
Original Articles
Value, but high costs in post-deposition data curation
Database, Volume 2016, 2016, bav126, https://doi.org/10.1093/database/bav126
Portal of medical data models: information infrastructure for medical research and healthcare
Database, Volume 2016, 2016, bav121, https://doi.org/10.1093/database/bav121
The Corvids Literature Database—500 years of ornithological research from a crow’s perspective
Database, Volume 2016, 2016, bav122, https://doi.org/10.1093/database/bav122
CCSI: a database providing chromatin–chromatin spatial interaction information
Database, Volume 2016, 2016, bav124, https://doi.org/10.1093/database/bav124
NALDB: nucleic acid ligand database for small molecules targeting nucleic acid
Database, Volume 2016, 2016, baw002, https://doi.org/10.1093/database/baw002
The UniProtKB guide to the human proteome
Database, Volume 2016, 2016, bav120, https://doi.org/10.1093/database/bav120
dbPEC: a comprehensive literature-based database for preeclampsia related genes and phenotypes
Database, Volume 2016, 2016, baw006, https://doi.org/10.1093/database/baw006
Principles of metadata organization at the ENCODE data coordination center
Database, Volume 2016, 2016, baw001, https://doi.org/10.1093/database/baw001
DemaDb: an integrated dematiaceous fungal genomes database
Database, Volume 2016, 2016, baw008, https://doi.org/10.1093/database/baw008
Wikidata as a semantic framework for the Gene Wiki initiative
Database, Volume 2016, 2016, baw015, https://doi.org/10.1093/database/baw015
KinetochoreDB: a comprehensive online resource for the kinetochore and its related proteins
Database, Volume 2016, 2016, baw019, https://doi.org/10.1093/database/baw019
From one to many: expanding the Saccharomyces cerevisiae reference genome panel
Database, Volume 2016, 2016, baw020, https://doi.org/10.1093/database/baw020
CSCdb: a cancer stem cells portal for markers, related genes and functional information
Database, Volume 2016, 2016, baw023, https://doi.org/10.1093/database/baw023
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations
Database, Volume 2016, 2016, baw027, https://doi.org/10.1093/database/baw027
CCProf: exploring conformational change profile of proteins
Database, Volume 2016, 2016, baw029, https://doi.org/10.1093/database/baw029
CD-REST: a system for extracting chemical-induced disease relation in literature
Database, Volume 2016, 2016, baw036, https://doi.org/10.1093/database/baw036
RSIADB, a collective resource for genome and transcriptome analyses in Rhizoctonia solani AG1 IA
Database, Volume 2016, 2016, baw031, https://doi.org/10.1093/database/baw031
Genic insights from integrated human proteomics in GeneCards
Database, Volume 2016, 2016, baw030, https://doi.org/10.1093/database/baw030
Chemical-induced disease relation extraction with various linguistic features
Database, Volume 2016, 2016, baw042, https://doi.org/10.1093/database/baw042
ICEPO: the ion channel electrophysiology ontology
Database, Volume 2016, 2016, baw017, https://doi.org/10.1093/database/baw017
ATtRACT—a database of RNA-binding proteins and associated motifs
Database, Volume 2016, 2016, baw035, https://doi.org/10.1093/database/baw035
RegenBase: a knowledge base of spinal cord injury biology for translational research
Database, Volume 2016, 2016, baw040, https://doi.org/10.1093/database/baw040
Efficient chemical-disease identification and relationship extraction using Wikipedia to improve recall
Database, Volume 2016, 2016, baw039, https://doi.org/10.1093/database/baw039
ToxDB: pathway-level interpretation of drug-treatment data
Database, Volume 2016, 2016, baw052, https://doi.org/10.1093/database/baw052
3CDB: a manually curated database of chromosome conformation capture data
Database, Volume 2016, 2016, baw044, https://doi.org/10.1093/database/baw044
Extraction of chemical-induced diseases using prior knowledge and textual information
Database, Volume 2016, 2016, baw046, https://doi.org/10.1093/database/baw046
Exploiting syntactic and semantics information for chemical–disease relation extraction
Database, Volume 2016, 2016, baw048, https://doi.org/10.1093/database/baw048
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource
Database, Volume 2016, 2016, baw045, https://doi.org/10.1093/database/baw045
Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning
Database, Volume 2016, 2016, baw049, https://doi.org/10.1093/database/baw049
A crowdsourcing workflow for extracting chemical-induced disease relations from free text
Database, Volume 2016, 2016, baw051, https://doi.org/10.1093/database/baw051
PGP repository: a plant phenomics and genomics data publication infrastructure
Database, Volume 2016, 2016, baw033, https://doi.org/10.1093/database/baw033
Kalium: a database of potassium channel toxins from scorpion venom
Database, Volume 2016, 2016, baw056, https://doi.org/10.1093/database/baw056
Integrated sequence and immunology filovirus database at Los Alamos
Database, Volume 2016, 2016, baw047, https://doi.org/10.1093/database/baw047
Chemical entity recognition in patents by combining dictionary-based and statistical approaches
Database, Volume 2016, 2016, baw061, https://doi.org/10.1093/database/baw061
BioCreative V CDR task corpus: a resource for chemical disease relation extraction
Database, Volume 2016, 2016, baw068, https://doi.org/10.1093/database/baw068
Mining chemical patents with an ensemble of open systems
Database, Volume 2016, 2016, baw065, https://doi.org/10.1093/database/baw065
PepPSy: a web server to prioritize gene products in experimental and biocuration workflows
Database, Volume 2016, 2016, baw070, https://doi.org/10.1093/database/baw070
The Chinchilla Research Resource Database: resource for an otolaryngology disease model
Database, Volume 2016, 2016, baw073, https://doi.org/10.1093/database/baw073
DPTEdb, an integrative database of transposable elements in dioecious plants
Database, Volume 2016, 2016, baw078, https://doi.org/10.1093/database/baw078
BELTracker: evidence sentence retrieval for BEL statements
Database, Volume 2016, 2016, baw079, https://doi.org/10.1093/database/baw079
Argo: enabling the development of bespoke workflows and services for disease annotation
Database, Volume 2016, 2016, baw066, https://doi.org/10.1093/database/baw066
A knowledge-poor approach to chemical-disease relation extraction
Database, Volume 2016, 2016, baw071, https://doi.org/10.1093/database/baw071
Predicting structured metadata from unstructured metadata
Database, Volume 2016, 2016, baw080, https://doi.org/10.1093/database/baw080
URS DataBase: universe of RNA structures and their motifs
Database, Volume 2016, 2016, baw085, https://doi.org/10.1093/database/baw085
MET network in PubMed: a text-mined network visualization and curation system
Database, Volume 2016, 2016, baw090, https://doi.org/10.1093/database/baw090
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs
Database, Volume 2016, 2016, baw092, https://doi.org/10.1093/database/baw092
HITSZ_CDR: an end-to-end chemical and disease relation extraction system for BioCreative V
Database, Volume 2016, 2016, baw077, https://doi.org/10.1093/database/baw077
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors
Database, Volume 2016, 2016, baw088, https://doi.org/10.1093/database/baw088
AuDis: an automatic CRF-enhanced disease normalization in biomedical text
Database, Volume 2016, 2016, baw091, https://doi.org/10.1093/database/baw091
Mining clinical attributes of genomic variants through assisted literature curation in Egas
Database, Volume 2016, 2016, baw096, https://doi.org/10.1093/database/baw096
SorghumFDB: sorghum functional genomics database with multidimensional network analysis
Database, Volume 2016, 2016, baw099, https://doi.org/10.1093/database/baw099
Coreference resolution improves extraction of Biological Expression Language statements from texts
Database, Volume 2016, 2016, baw076, https://doi.org/10.1093/database/baw076
neXtA 5 : accelerating annotation of articles via automated approaches in neXtProt
Database, Volume 2016, 2016, baw098, https://doi.org/10.1093/database/baw098
TMC-SNPdb: an Indian germline variant database derived from whole exome sequences
Database, Volume 2016, 2016, baw104, https://doi.org/10.1093/database/baw104
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki
Database, Volume 2016, 2016, baw105, https://doi.org/10.1093/database/baw105
Establishment of Kawasaki disease database based on metadata standard
Database, Volume 2016, 2016, baw109, https://doi.org/10.1093/database/baw109
NTTMUNSW BioC modules for recognizing and normalizing species and gene/protein mentions
Database, Volume 2016, 2016, baw111, https://doi.org/10.1093/database/baw111
How much does curation cost?
Database, Volume 2016, 2016, baw110, https://doi.org/10.1093/database/baw110
Crowdsourcing and curation: perspectives from biology and natural language processing
Database, Volume 2016, 2016, baw115, https://doi.org/10.1093/database/baw115
BioC viewer: a web-based tool for displaying and merging annotations in BioC
Database, Volume 2016, 2016, baw106, https://doi.org/10.1093/database/baw106
PIPE: a protein–protein interaction passage extraction module for BioCreative challenge
Database, Volume 2016, 2016, baw101, https://doi.org/10.1093/database/baw101
DDRprot: a database of DNA damage response-related proteins
Database, Volume 2016, 2016, baw123, https://doi.org/10.1093/database/baw123
Overview of the interactive task in BioCreative V
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Modeling biochemical pathways in the gene ontology
Database, Volume 2016, 2016, baw126, https://doi.org/10.1093/database/baw126
