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Illustrative structures from the front page of the database pointing to cla...
Published: 31 July 2026
Figure 1
Illustrative structures from the front page of the database pointing to classes 1, 2, and 3 with the corresponding phylogenetic trees; numbers indicate the phylogenetic families within each class. Six-panel Fig. showing ribbon structures and phylogenetic trees for the three classes of asparaginas
Journal Article
The Asparaginase Database: a comprehensive resource and classification of l-asparaginases
Database, Volume 2026, 2026, baag045, https://doi.org/10.1093/database/baag045
Published: 31 July 2026
Journal Article
RUM/FILH: a standardized operational capability model for biodiversity databases
Database, Volume 2026, 2026, baag044, https://doi.org/10.1093/database/baag044
Published: 28 July 2026
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ExositeDB Confidence Scoring System and Quality Assessment. (a) Distributio...
Published: 28 July 2026
Figure 3
ExositeDB Confidence Scoring System and Quality Assessment. (a) Distribution of overall confidence scores across 525 validated entries, showing tier classification: Low (< 0.60), Medium (0.60–0.79), and High ( 0.80). Vertical lines indicate mean (0.634) and median (0.671) values. (b) Component s
Journal Article
STING-ExositeDB: An AI-assisted curated database of protein exosites for drug discovery
Database, Volume 2026, 2026, baag031, https://doi.org/10.1093/database/baag031
Published: 28 July 2026
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Conceptual framework of protein exosites and ExositeDB development. (a) Fun...
Published: 28 July 2026
Figure 1
Conceptual framework of protein exosites and ExositeDB development. (a) Fundamental distinction between exosites and allosteric sites: exosites primarily recruit macromolecular partners while allosteric sites regulate catalytic activity. (b) Clinical validation through thrombin exosite I targeting v
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Interactive Web Platform Architecture and Features. (a) System architecture...
Published: 28 July 2026
Figure 4
Interactive Web Platform Architecture and Features. (a) System architecture showing three-tier design with React frontend, FastAPI backend, and MySQL database, enabling RESTful API access and interactive 3D visualization. (b) Screenshot of search interface demonstrating faceted filtering across prot
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Database Coverage and Temporal Analysis. (a) Exosite-specific entry counts ...
Published: 28 July 2026
Figure 5
Database Coverage and Temporal Analysis. (a) Exosite-specific entry counts across databases: ExositeDB (525 entries), PDB full-text search (98 entries), and UniProt keyword search (82 entries), demonstrating 5.4 larger coverage compared to existing resources. (b) Temporal distribution showing ann
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AI-assisted curation pipeline for ExositeDB. The six-stage workflow proceed...
Published: 28 July 2026
Figure 2
AI-assisted curation pipeline for ExositeDB. The six-stage workflow proceeds from structured PubMed literature mining (Stage 1) through three-pass GPT-4o extraction (Stage 2), PDB-based structural validation with SIFTS residue mapping (Stage 3), four-component confidence scoring (Stage 4), expert re
Journal Article
TogoMCP: natural language querying of life-science knowledge graphs via schema-guided LLMs and the Model Context Protocol
Database, Volume 2026, 2026, baag042, https://doi.org/10.1093/database/baag042
Published: 24 July 2026
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Sample collection and processing workflow. Butterflies were captured in the...
Published: 24 July 2026
Figure 1
Sample collection and processing workflow. Butterflies were captured in the field and immediately placed in labelled envelopes inside a cooler bag to prevent dehydration and to anesthetize them. Freezing does not generally damage butterfly wings that are coloured by pigments but can damage structura
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Correlation between wing brightness measured under sunlight and artificial ...
Published: 24 July 2026
Figure 5
Correlation between wing brightness measured under sunlight and artificial illumination. Nine butterfly species were imaged under natural sunlight and under the artificial illumination (i.e. Exo Terra bulb). Multispectral image stacks were generated using MICA toolbox in ImageJ [ 49 ]. Identical col
Journal Article
OzButterflies – a high quality open database of multispectral images and spectra of tropical to temperate Australian butterflies
Database, Volume 2026, 2026, baag040, https://doi.org/10.1093/database/baag040
Published: 24 July 2026
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Photographic setup and sample images from the database. (A) 1. Specimen ID ...
Published: 24 July 2026
Figure 2
Photographic setup and sample images from the database. (A) 1. Specimen ID tag, 2. Specimen, 3. 60% full-spectrum grey standard, 4. Scale, 5. 20% full-spectrum grey standard, 6. UV filter, 7. Visible filter, 8. Camera, 9. UV lamps. 10. Tripod, 11. PTFE diffuser, 12. Computer. Samples were placed in
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Summary of database samples. (A) Distribution of families collected in thre...
Published: 24 July 2026
Figure 6
Summary of database samples. (A) Distribution of families collected in three climate zones (temperate, subtropical and tropical); numbers represent the total number of species for each zone. (B) Distribution of males and females collected in three climate zones (temperate, subtropical and tropical);
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Overview of the TogoMCP workflow for the example query ‘Show me any compoun...
Published: 24 July 2026
Figure 1
Overview of the TogoMCP workflow for the example query ‘Show me any compounds binding to human TP53’. The four stages proceed left to right: (1) natural language analysis to extract key concepts, (2) entity resolution via external search APIs to obtain database-specific identifiers, (3) retrieval of
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Representation of the spectroscopy workflow. (A) Spectrophotometer setup. 1...
Published: 24 July 2026
Figure 3
Representation of the spectroscopy workflow. (A) Spectrophotometer setup. 1. Lamp output was set perpendicular to the sample, 2. Laser guided optic fiber probe was set at 45 o to the sample, 3. Butterfly wings were taped flat onto black cardboard, 4. Turnstage was flipped 15 o to the right to obta
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Flowchart of the processes used to ID specimens in the database. Specimens ...
Published: 24 July 2026
Figure 4
Flowchart of the processes used to ID specimens in the database. Specimens that did not have successful CO1 sequence amplification during PCR were identified on morphological features only, taking into consideration other species occurring in the community as determined by other CO1 sequences. Unsuc
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Curation workflows for the two types of annotation tasks. Each workflow beg...
Published: 22 July 2026
Figure 1
Curation workflows for the two types of annotation tasks. Each workflow begins with a prompt and input text consisting of the experiment’s metadata from GEO (title, summary, overall design, sample-level characteristics and protocol descriptions) and, when available, associated publication (title, ab
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Example of the mouse strain annotation workflow. An example given for GEO e...
Published: 22 July 2026
Figure 2
Example of the mouse strain annotation workflow. An example given for GEO experiment GSE160402, including the prompt, input text, ontology term list (in JSON format), and the resulting output (in JSON format). For image description, please refer to the figure legend and surrounding text.
