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VarStack2 uses APIs to retrieve information from COSMIC, ClinVar, cBioPorta... Open Access
Published: 11 April 2026
Figure 1
VarStack 2 uses APIs to retrieve information from COSMIC, ClinVar, cBioPortal, UCSC Genome Browser, ClinicalTrials.gov, and CIViC. An iframe was used for UCSC Genome Browser and ClinVar. VarStack2 uses APIs to retrieve information from COSMIC, ClinVar, cBioPortal, UCSC Genome Browser, ClinicalTr
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Histogram of renal clearance values (L/h). For image description, please... Open Access
Published: 11 April 2026
Figure 1
Histogram of renal clearance values (L/h). For image description, please refer to the figure legend and surrounding text.
Journal Article
VarStack2—an interactive web tool for somatic variant interpretation in cancer Open Access
Database, Volume 2026, 2026, baag016, https://doi.org/10.1093/database/baag016
Published: 11 April 2026
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Histogram showing the frequency with which a particular route of administra... Open Access
Published: 11 April 2026
Figure 3
Histogram showing the frequency with which a particular route of administration was chosen for a drug. For image description, please refer to the figure legend and surrounding text.
Journal Article
Dataset of xenobiotics human renal clearance values Open Access
Database, Volume 2026, 2026, baag018, https://doi.org/10.1093/database/baag018
Published: 11 April 2026
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Case study to interpret KRAS p.G12V in Colorectal Adenocarcinoma using VarS... Open Access
Published: 11 April 2026
Figure 2
Case study to interpret KRAS p.G12V in Colorectal Adenocarcinoma using VarStack 2 . The variant and tumour type are entered in search window (a) VarStack 2 retrieves information from (b) COSMIC, (c) ClinVar, (d) cBioPortal, (e) UCSC Genome Browser, and (f) ClinicalTrials.gov, (g) CIViC and displays
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Categories of health status and their counts. For image description, ple... Open Access
Published: 11 April 2026
Figure 2
Categories of health status and their counts. For image description, please refer to the figure legend and surrounding text.
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Counts of analytical methods presented in scientific articles. HPLC—high-pe... Open Access
Published: 11 April 2026
Figure 4
Counts of analytical methods presented in scientific articles. HPLC—high-performance liquid chromatography; LC-MS/MS—liquid chromatography–tandem mass spectrometry. For image description, please refer to the figure legend and surrounding text.
Journal Article
MASH-GA: a manually curated cross-species transcriptomic database for metabolic-associated steatohepatitis Open Access
Database, Volume 2026, 2026, baag013, https://doi.org/10.1093/database/baag013
Published: 02 April 2026
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Differential expression and functional enrichment analyses across disease s... Open Access
Published: 02 April 2026
Figure 4
Differential expression and functional enrichment analyses across disease stages. (a, b) Differential expression volcano plot (a) and GO Biological Process enrichment bubble plot (b) for obese vs. normal. (c, d) Differential expression volcano plot (c) and GO Biological Process enrichment bubble plo
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Analysis of cell-type composition and rewired cell–cell communication (CCC)... Open Access
Published: 02 April 2026
Figure 3
Analysis of cell-type composition and rewired cell–cell communication (CCC) ligand–receptor interaction (LRI) pairs between eight major brain cell types in comparative analysis from BDCD. (a) Cell type proportions of sc/snRNA-seq datasets across eight disease conditions, including four subtypes of A
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Overview of the MASH-GA dataset composition. (a) Countries contributing hum... Open Access
Published: 02 April 2026
Figure 1
Overview of the MASH-GA dataset composition. (a) Countries contributing human datasets (n = 17). (b) Dataset counts per country. (c) Year-by-year accrual of studies (2010–2025 H1). (d) Proportion of NGS (n = 138) versus microarray (n = 28) datasets. (e) Distribution of sequencing platforms among
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Overview of the MASH-GA pipeline and analysis modules. GEO datasets are cur... Open Access
Published: 02 April 2026
Figure 2
Overview of the MASH-GA pipeline and analysis modules. GEO datasets are curated into the MASH-GA database, which is served through an R Shiny web interface. The Human module offers six analytical views, whereas the Mouse module visualizes gene expression across eight NASH models. Two functionally
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Overview of data collection, computational analysis, and downstream annotat... Open Access
Published: 02 April 2026
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Overview of data collection, computational analysis, and downstream annotation of BDCD. AD: Alzheimer’s disease. ST: spatial transcriptomics. CCC: cell–cell communication. LRI: ligand–receptor interaction. GWAS: genome-wide association studies. LR: ligand receptor. SNP: single nucleotide polymorphis
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Overview of BDCD web interface. BDCD portal offers an intuitive interface t... Open Access
Published: 02 April 2026
Figure 2
Overview of BDCD web interface. BDCD portal offers an intuitive interface to explore brain disease-related cell–cell communication (CCC) data. Users can browse CCC data by brain region (a), dataset (b), or cell type (c). The platform offers interactive views of ligand–receptor interactions (LRI) (d)
Journal Article
BDCD: a comprehensive Brain Disease Cell-cell communication Database Open Access
Database, Volume 2026, 2026, baag017, https://doi.org/10.1093/database/baag017
Published: 02 April 2026
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Multilevel assessment of COL1A1 expression and coexpression in MASH-GA. (a)... Open Access
Published: 02 April 2026
Figure 3
Multilevel assessment of COL1A1 expression and coexpression in MASH-GA. (a) COL1A1 increases stepwise from normal controls (NC) to obese and NAFLD and peaks in NASH (human cohort, P < .001). (b) Across 10 independent datasets, COL1A1 rises with fibrosis stage, F0 → F4. (c) Cross-cohort comparis
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Functional characterization and validation of dysregulated LRIs. (a) Distri... Open Access
Published: 02 April 2026
Figure 4
Functional characterization and validation of dysregulated LRIs. (a) Distribution of protein class of ligand/receptor genes in sc/snRNA-seq datasets. (b) Distribution of protein class of ligand/receptor genes in spatial transcriptomics datasets. (c) KEGG pathway enrichment of rewired ligand/receptor
Journal Article
IsoProDB: an integrated map of human protein isoforms for accelerated research Open Access
Database, Volume 2026, 2026, baag015, https://doi.org/10.1093/database/baag015
Published: 26 March 2026
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The schematic illustrates the methods and resources used for the developmen... Open Access
Published: 26 March 2026
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The schematic illustrates the methods and resources used for the development of IsoProDB. Schematic representation of the workflow, methods, and data sources involved in the development of IsoProDB.
