Volume 2013, 2013
Original Articles
RefPrimeCouch—a reference gene primer CouchApp
Database, Volume 2013, 2013, bat081, https://doi.org/10.1093/database/bat081
Chemical annotation of small and peptide-like molecules at the Protein Data Bank
Database, Volume 2013, 2013, bat079, https://doi.org/10.1093/database/bat079
Addition of a breeding database in the Genome Database for Rosaceae
Database, Volume 2013, 2013, bat078, https://doi.org/10.1093/database/bat078
CoIN: a network analysis for document triage
Database, Volume 2013, 2013, bat076, https://doi.org/10.1093/database/bat076
HypoxiaDB: a database of hypoxia-regulated proteins
Database, Volume 2013, 2013, bat074, https://doi.org/10.1093/database/bat074
Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases
Database, Volume 2013, 2013, bat075, https://doi.org/10.1093/database/bat075
yApoptosis: yeast apoptosis database
Database, Volume 2013, 2013, bat068, https://doi.org/10.1093/database/bat068
Capturing cooperative interactions with the PSI-MI format
Database, Volume 2013, 2013, bat066, https://doi.org/10.1093/database/bat066
BioC: a minimalist approach to interoperability for biomedical text processing
Database, Volume 2013, 2013, bat064, https://doi.org/10.1093/database/bat064
Groups: knowledge spreadsheets for symbolic biocomputing
Database, Volume 2013, 2013, bat061, https://doi.org/10.1093/database/bat061
IQdb: an intelligence quotient score-associated gene resource for human intelligence
Database, Volume 2013, 2013, bat063, https://doi.org/10.1093/database/bat063
BGDB: a database of bivalent genes
Database, Volume 2013, 2013, bat057, https://doi.org/10.1093/database/bat057
BmTEdb: a collective database of transposable elements in the silkworm genome
Database, Volume 2013, 2013, bat055, https://doi.org/10.1093/database/bat055
JBioWH: an open-source Java framework for bioinformatics data integration
Database, Volume 2013, 2013, bat051, https://doi.org/10.1093/database/bat051
DoSA: Database of Structural Alignments
Database, Volume 2013, 2013, bat048, https://doi.org/10.1093/database/bat048
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
Database, Volume 2013, 2013, bat034, https://doi.org/10.1093/database/bat034
A guide to best practices for Gene Ontology (GO) manual annotation
Database, Volume 2013, 2013, bat054, https://doi.org/10.1093/database/bat054
DBATE: database of alternative transcripts expression
Database, Volume 2013, 2013, bat050, https://doi.org/10.1093/database/bat050
Analysis of disease-associated objects at the Rat Genome Database
Database, Volume 2013, 2013, bat046, https://doi.org/10.1093/database/bat046
The CARLSBAD Database: A Confederated Database of Chemical Bioactivities
Database, Volume 2013, 2013, bat044, https://doi.org/10.1093/database/bat044
The Banana Genome Hub
Database, Volume 2013, 2013, bat035, https://doi.org/10.1093/database/bat035
From manual curation to visualization of gene families and networks across Solanaceae plant species
Database, Volume 2013, 2013, bat028, https://doi.org/10.1093/database/bat028
PhenoDigm: analyzing curated annotations to associate animal models with human diseases
Database, Volume 2013, 2013, bat025, https://doi.org/10.1093/database/bat025
PCorral—interactive mining of protein interactions from MEDLINE
Database, Volume 2013, 2013, bat030, https://doi.org/10.1093/database/bat030
The MetaboLights repository: curation challenges in metabolomics
Database, Volume 2013, 2013, bat029, https://doi.org/10.1093/database/bat029
The Protein Model Portal—a comprehensive resource for protein structure and model information
Database, Volume 2013, 2013, bat031, https://doi.org/10.1093/database/bat031
The challenge of increasing Pfam coverage of the human proteome
Database, Volume 2013, 2013, bat023, https://doi.org/10.1093/database/bat023
PhenoMiner: quantitative phenotype curation at the rat genome database
Database, Volume 2013, 2013, bat015, https://doi.org/10.1093/database/bat015
Sequencing and comparative analysis of the gorilla MHC genomic sequence
Database, Volume 2013, 2013, bat011, https://doi.org/10.1093/database/bat011
hLGDB: a database of human lysosomal genes and their regulation
Database, Volume 2013, 2013, bat024, https://doi.org/10.1093/database/bat024
Identification and prioritization of novel uncharacterized peptidases for biochemical characterization
Database, Volume 2013, 2013, bat022, https://doi.org/10.1093/database/bat022
Annotating the biomedical literature for the human variome
Database, Volume 2013, 2013, bat019, https://doi.org/10.1093/database/bat019
MalaCards: an integrated compendium for diseases and their annotation
Database, Volume 2013, 2013, bat018, https://doi.org/10.1093/database/bat018
Towards the Collaborative Curation of the Registry underlying identifiers.org
Database, Volume 2013, 2013, bat017, https://doi.org/10.1093/database/bat017
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome
Database, Volume 2013, 2013, bat013, https://doi.org/10.1093/database/bat013
Uncovering hidden duplicated content in public transcriptomics data
Database, Volume 2013, 2013, bat010, https://doi.org/10.1093/database/bat010
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
Database, Volume 2013, 2013, bat009, https://doi.org/10.1093/database/bat009
YY1TargetDB: an integral information resource for Yin Yang 1 target loci
Database, Volume 2013, 2013, bat007, https://doi.org/10.1093/database/bat007
T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes
Database, Volume 2013, 2013, bas061, https://doi.org/10.1093/database/bas061
Using the OntoGene pipeline for the triage task of BioCreative 2012
Database, Volume 2013, 2013, bas053, https://doi.org/10.1093/database/bas053
The YeastGenome app: the Saccharomyces Genome Database at your fingertips
Database, Volume 2013, 2013, bat004, https://doi.org/10.1093/database/bat004
CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes
Database, Volume 2013, 2013, bat002, https://doi.org/10.1093/database/bat002
‘What’s in the NIDDK CDR?’—public query tools for the NIDDK central data repository
Database, Volume 2013, 2013, bas058, https://doi.org/10.1093/database/bas058
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans
Database, Volume 2013, 2013, bas062, https://doi.org/10.1093/database/bas062
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task
Database, Volume 2013, 2013, bas056, https://doi.org/10.1093/database/bas056
The Xenbase literature curation process
Database, Volume 2013, 2013, bas046, https://doi.org/10.1093/database/bas046
Database Tool
BBGRE: brain and body genetic resource exchange
Database, Volume 2013, 2013, bat067, https://doi.org/10.1093/database/bat067
GnpIS: an information system to integrate genetic and genomic data from plants and fungi
Database, Volume 2013, 2013, bat058, https://doi.org/10.1093/database/bat058
CREDO: a structural interactomics database for drug discovery
Database, Volume 2013, 2013, bat049, https://doi.org/10.1093/database/bat049
MisPred: a resource for identification of erroneous protein sequences in public databases
Database, Volume 2013, 2013, bat053, https://doi.org/10.1093/database/bat053
T2D@ZJU: a knowledgebase integrating heterogeneous connections associated with type 2 diabetes mellitus
Database, Volume 2013, 2013, bat052, https://doi.org/10.1093/database/bat052
CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease
Database, Volume 2013, 2013, bat047, https://doi.org/10.1093/database/bat047
GoSynthetic database tool to analyse natural and engineered molecular processes
Database, Volume 2013, 2013, bat043, https://doi.org/10.1093/database/bat043
eFG: an electronic resource for Fusarium graminearum
Database, Volume 2013, 2013, bat042, https://doi.org/10.1093/database/bat042
FSRD: fungal stress response database
Database, Volume 2013, 2013, bat037, https://doi.org/10.1093/database/bat037
dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts
Database, Volume 2013, 2013, bat014, https://doi.org/10.1093/database/bat014
PIPEMicroDB: microsatellite database and primer generation tool for pigeonpea genome
Database, Volume 2013, 2013, bas054, https://doi.org/10.1093/database/bas054
Database Update
TIMBAL v2: update of a database holding small molecules modulating protein–protein interactions
Database, Volume 2013, 2013, bat039, https://doi.org/10.1093/database/bat039
TIARA genome database: update 2013
Database, Volume 2013, 2013, bat003, https://doi.org/10.1093/database/bat003
The Annotation-enriched non-redundant patent sequence databases
Database, Volume 2013, 2013, bat005, https://doi.org/10.1093/database/bat005
Letter to the Editor
Corrigendum
The challenge of increasing Pfam coverage of the human proteome
Database, Volume 2013, 2013, bat040, https://doi.org/10.1093/database/bat040
