Section: Review
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Journal Article

Goals and strategies for the indexing of publication types and study designs

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Neil R Smalheiser, Joe D Menke, Arthur W Holt, Halil Kilicoglu, Jodi Schneider
Database, Volume 2026, 2026, baag039, https://doi.org/10.1093/database/baag039
Published: 14 July 2026
Journal Article

Liposomal Cancer Drug Database (LCDD): a comprehensive resource for liposome research in cancer therapy and diagnosis

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Marziyeh Mousazadeh, Babak Khorsand, Sayed Mostafa Modarres Mousavi, Hooman Mahmoudi Aznaveh, Mohamad Hassan Fouani, Faezeh Mousazadeh, Mehrnaz Rad-Faraji, Arezoo Golestanipour, Soheila Mohammadi, Fateme Zarein, Alireza Dantism, Javad Zahiri, Maryam Nikkhah
Database, Volume 2025, 2025, baaf042, https://doi.org/10.1093/database/baaf042
Published: 31 October 2025
Journal Article

Review of autism spectrum disorder databases for the identification of candidate genes

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Diana Martínez-Minguet, René Noel, Alberto García S., Mireia Costa, Oscar Pastor
Database, Volume 2025, 2025, baaf067, https://doi.org/10.1093/database/baaf067
Published: 15 October 2025
Journal Article

A review on Gene Ontology evaluations

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Borja Pitarch, Mónica Chagoyen, Juan A G Ranea, Florencio Pazos
Database, Volume 2025, 2025, baaf058, https://doi.org/10.1093/database/baaf058
Published: 24 September 2025
Journal Article

Protein Sequence Analysis landscape: A Systematic Review of Task Types, Databases, Datasets, Word Embeddings Methods, and Language Models

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Muhammad Nabeel Asim, Tayyaba Asif, Faiza Hassan, Andreas Dengel
Database, Volume 2025, 2025, baaf027, https://doi.org/10.1093/database/baaf027
Published: 30 May 2025
Journal Article

Global Globin Network and adopting genomic variant database requirements for thalassemia

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Hashim Halim-Fikri, Ninie Nadia Zulkipli, Hafiza Alauddin, Celeste Bento, Carsten W Lederer, Petros Kountouris, Marina Kleanthous, Yetti Hernaningsih, Meow-Keong Thong, Muhammad Hamdi Mahmood, Norafiza Mohd Yasin, Ezalia Esa, Jacques Elion, Domenico Coviello, Raja-Zahratul-Azma Raja-Sabudin, Ghada El-Kamah, John Burn, Narazah Mohd Yusoff, Raj Ramesar … on behalf of the Global Globin Network (GGN)
Database, Volume 2024, 2024, baae080, https://doi.org/10.1093/database/baae080
Published: 04 September 2024
Journal Article

Analysis and review of techniques and tools based on machine learning and deep learning for prediction of lysine malonylation sites in protein sequences

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Shahin Ramazi, Seyed Amir Hossein Tabatabaei, Elham Khalili, Amirhossein Golshan Nia, Kiomars Motarjem
Database, Volume 2024, 2024, baad094, https://doi.org/10.1093/database/baad094
Published: 19 January 2024
Journal Article

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences

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Cecilia H Deng, Sushma Naithani, Sunita Kumari, Irene Cobo-Simón, Elsa H Quezada-Rodríguez, Maria Skrabisova, Nick Gladman, Melanie J Correll, Akeem Babatunde Sikiru, Olusola O Afuwape, Annarita Marrano, Ines Rebollo, Wentao Zhang, Sook Jung, On behalf of the Genotype-Phenotype Working Group, AgBioData
Database, Volume 2023, 2023, baad088, https://doi.org/10.1093/database/baad088
Published: 11 December 2023
Journal Article

The importance of graph databases and graph learning for clinical applications

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Daniel Walke, Daniel Micheel, Kay Schallert, Thilo Muth, David Broneske, Gunter Saake, Robert Heyer
Database, Volume 2024, 2024, baad045, https://doi.org/10.1093/database/baad045
Published: 10 July 2023
Journal Article

Review of databases for experimentally validated human microRNA–mRNA interactions

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Dorian Kariuki, Kesava Asam, Bradley E Aouizerat, Kimberly A Lewis, Jose C Florez, Elena Flowers
Database, Volume 2023, 2023, baad014, https://doi.org/10.1093/database/baad014
Published: 25 April 2023
Journal Article

New approaches in developing medicinal herbs databases

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Zahra Fathifar, Leila R Kalankesh, Alireza Ostadrahimi, Reza Ferdousi
Database, Volume 2023, 2023, baac110, https://doi.org/10.1093/database/baac110
Published: 10 January 2023
Journal Article

A review on antimicrobial peptides databases and the computational tools

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Shahin Ramazi, Neda Mohammadi, Abdollah Allahverdi, Elham Khalili, Parviz Abdolmaleki
Database, Volume 2022, 2022, baac011, https://doi.org/10.1093/database/baac011
Published: 19 March 2022
Journal Article

Web tools to perform long non-coding RNAs analysis in oncology research

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Shixing Gu, Guangjie Zhang, Qin Si, Jiawen Dai, Zhen Song, Yingshuang Wang
Database, Volume 2021, 2021, baab047, https://doi.org/10.1093/database/baab047
Published: 23 July 2021
Journal Article

An overview of graph databases and their applications in the biomedical domain

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Santiago Timón-Reina, Mariano Rincón, Rafael Martínez-Tomás
Database, Volume 2021, 2021, baab026, https://doi.org/10.1093/database/baab026
Published: 18 May 2021
Journal Article

Post-translational modifications in proteins: resources, tools and prediction methods

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Shahin Ramazi, Javad Zahiri
Database, Volume 2021, 2021, baab012, https://doi.org/10.1093/database/baab012
Published: 07 April 2021
Journal Article

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

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Lauren Chan, Nicole Vasilevsky, Anne Thessen, Julie McMurry, Melissa Haendel
Database, Volume 2021, 2021, baab003, https://doi.org/10.1093/database/baab003
Published: 25 January 2021
Journal Article

NCBI Taxonomy: a comprehensive update on curation, resources and tools

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Conrad L Schoch, Stacy Ciufo, Mikhail Domrachev, Carol L Hotton, Sivakumar Kannan, Rogneda Khovanskaya, Detlef Leipe, Richard Mcveigh, Kathleen O’Neill, Barbara Robbertse, Shobha Sharma, Vladimir Soussov, John P Sullivan, Lu Sun, Seán Turner, Ilene Karsch-Mizrachi
Database, Volume 2020, 2020, baaa062, https://doi.org/10.1093/database/baaa062
Published: 06 August 2020
Journal Article

Artificial intelligence with multi-functional machine learning platform development for better healthcare and precision medicine

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Zeeshan Ahmed, Khalid Mohamed, Saman Zeeshan, XinQi Dong
Database, Volume 2020, 2020, baaa010, https://doi.org/10.1093/database/baaa010
Published: 17 March 2020
Journal Article

Benchmarking database systems for Genomic Selection implementation

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Yaw Nti-Addae, Dave Matthews, Victor Jun Ulat, Raza Syed, Guilhem Sempéré, Adrien Pétel, Jon Renner, Pierre Larmande, Valentin Guignon, Elizabeth Jones, Kelly Robbins
Database, Volume 2019, 2019, baz096, https://doi.org/10.1093/database/baz096
Published: 11 September 2019
Journal Article

A survey of ontology learning techniques and applications

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Muhammad Nabeel Asim, Muhammad Wasim, Muhammad Usman Ghani Khan, Waqar Mahmood, Hafiza Mahnoor Abbasi
Database, Volume 2018, 2018, bay101, https://doi.org/10.1093/database/bay101
Published: 05 October 2018