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Journal Article

Developing a web-based platform for Eragrostis tef resource management and analysis

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Badasa Firdisa Fufa, Adugna Abdi Woldesemayat, Abiy Zegeye
Database, Volume 2026, 2026, baag051, https://doi.org/10.1093/database/baag051
Published: 25 August 2026
Journal Article

Improving annotation, access, and comparison of nutritional composition data for underutilized crops

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Agnes Aboagye, Paul D Shaw, Sebastian Raubach, Sean Mayes, Graham King, Guillermina M Mendiondo
Database, Volume 2026, 2026, baag050, https://doi.org/10.1093/database/baag050
Published: 25 August 2026
Journal Article

MedHopper: an agentic RAG-LLM system for multi-hop biomedical QA

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Rustam Ruslanovich Taktashov, Nadezhda Yurievna Biziukova, Alexander Viktorovich Dmitriev, Olga Aleksandrovna Tarasova
Database, Volume 2026, 2026, baag047, https://doi.org/10.1093/database/baag047
Published: 13 August 2026
Journal Article

scRiskDB: a single-cell epigenomic resource linking complex traits to regulatory mechanisms across human tissues

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Gefei Zhao, Xianfeng Ping, Binbin Lai
Database, Volume 2026, 2026, baag048, https://doi.org/10.1093/database/baag048
Published: 05 August 2026
Journal Article

The Asparaginase Database: a comprehensive resource and classification of l-asparaginases

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Max Štětina, Aleš Křenek, Guglielmo Tedeschi, Filip Krása, Vojtěch Spiwok, Eva Benešová
Database, Volume 2026, 2026, baag045, https://doi.org/10.1093/database/baag045
Published: 31 July 2026
Journal Article

RUM/FILH: a standardized operational capability model for biodiversity databases

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Miklós Bán
Database, Volume 2026, 2026, baag044, https://doi.org/10.1093/database/baag044
Published: 28 July 2026
Journal Article

TogoMCP: natural language querying of life-science knowledge graphs via schema-guided LLMs and the Model Context Protocol

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Akira R Kinjo, Yasunori Yamamoto, Samuel Bustamante-Larriet, Jose-Emilio Labra-Gayo, Takatomo Fujisawa
Database, Volume 2026, 2026, baag042, https://doi.org/10.1093/database/baag042
Published: 24 July 2026
Journal Article

OzButterflies – a high quality open database of multispectral images and spectra of tropical to temperate Australian butterflies

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Marilia Fernandes Erickson, Hansani S S Daluwatta Galappaththige, Donald James Mclean, Diogo Jackson de Aquino Silva, Mariel Fulham, Zoe Wild, Michael B J Kelly, Christopher J Irving, Daniele Carlesso, Georgina E Binns, Sanni A Silvasti, Liisa Hämäläinen, Louis G O’Neill, Kiara L’Herpiniere, Johanna Mappes, David W Kikuchi, Hannah M Rowland, Michelle Power, Thomas E White … Marie E Herberstein
Database, Volume 2026, 2026, baag040, https://doi.org/10.1093/database/baag040
Published: 24 July 2026
Journal Article

Application of large language models to the annotation of cell lines and mouse strains in genomics data

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Sanja Rogic, B Ogan Mancarci, Brianna Xu, Anna Xiao, Carlton Yan, Paul Pavlidis
Database, Volume 2026, 2026, baag041, https://doi.org/10.1093/database/baag041
Published: 22 July 2026
Journal Article

NORG - Nitrogen ORGanizer: a novel web-based system for cryopreservation and freezer management

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Marvin Keller, Maximilian Przybilla, Jannik Sehring, Kai Schmid, Thomas Kauer, Felix Dörmer, Nadja Ritschel, Annika May, Hannah Schlierbach, Gudrun Schmidt, Kerstin Leib, Chiana Stephan, Elena Jenike, Carmen Selignow, Angelina Frank, Vincent Umathum, Anne Schänzer, Attila Németh, Keywan Sohrabi … Daniel Amsel
Database, Volume 2026, 2026, baag037, https://doi.org/10.1093/database/baag037
Published: 11 July 2026
Journal Article

IBDkb: an AI-enhanced integrative knowledge base for inflammatory bowel disease research and drug discovery

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Liwen Tao, Shiqing Shi, Ruixin Zhu, Zhuo Liu, Bin Yang, Lei Liu, Wanning Chen, Qian Long, Na Jiao, Guoqing Zhang, Pingping Xu, Dingfeng Wu
Database, Volume 2026, 2026, baag038, https://doi.org/10.1093/database/baag038
Published: 10 July 2026
Journal Article

GIDISdb: a gene expression database for exploring human immune responses in infectious diseases

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Yu Liao, Zhen-Lin Tan, Wen-Kang Shen, Wei Li, Qian Lei, An-Yuan Guo
Database, Volume 2026, 2026, baag036, https://doi.org/10.1093/database/baag036
Published: 09 July 2026
Journal Article

Development of CypriSSR: a genome-wide, chromosome-level microsatellite database for multiple cyprinidae species

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Princy Saini, Mir Asif Iquebal, Sarika Jaiswal, Ulavappa B Angadi
Database, Volume 2026, 2026, baag035, https://doi.org/10.1093/database/baag035
Published: 29 June 2026
Journal Article

A similarity metric, rubric, and unified hierarchy for biomedical publication types and study designs

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Neil R Smalheiser, Joe D Menke, Arthur W Holt
Database, Volume 2026, 2026, baag022, https://doi.org/10.1093/database/baag022
Published: 05 June 2026
Journal Article

PhaLP 2.0: extending the community-oriented phage lysin database with a SUBLYME pipeline for metagenomic discovery

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Alexandre Boulay, Victor Németh, Bjorn Criel, Michiel Stock, Bernard De Baets, Clovis Galiez, Elsa Rousseau, Yves Briers, Roberto Vázquez
Database, Volume 2026, 2026, baag033, https://doi.org/10.1093/database/baag033
Published: 05 June 2026
Journal Article

Rosetta Statements: simplifying FAIR knowledge graph construction with a user-centred approach

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Lars Vogt, Kheir Eddine Farfar, Pallavi Karanth, Marcel Konrad, Allard Oelen, Manuel Prinz, Philip Strömert
Database, Volume 2026, 2026, baag030, https://doi.org/10.1093/database/baag030
Published: 02 June 2026
Journal Article

Quantitative analysis of growth and diversification in venom data using database metrics

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Kim N Kirchhoff, Tobias Senoner, Selin Tuerkoglu, Ivan Koludarov, Björn M von Reumont, Mandë Holford
Database, Volume 2026, 2026, baag032, https://doi.org/10.1093/database/baag032
Published: 30 May 2026
Journal Article

Large-scale manual curation and harmonization of metadata from metagenomic and cancer genomic repositories: challenges and solutions

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Kaelyn Long, Kai Gravel-Pucillo, Levi Waldron, Sean Davis, Sehyun Oh
Database, Volume 2026, 2026, baag027, https://doi.org/10.1093/database/baag027
Published: 22 May 2026
Journal Article

TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers

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Yun Zhang, Jianqi She, Xueyan Hu, Yueqi Jin, Changyu Tao, Minghao Du, Ence Yang
Database, Volume 2026, 2026, baag025, https://doi.org/10.1093/database/baag025
Published: 19 May 2026
Journal Article

MetaCancerDB: a database of site-specific RNA–miRNA correlations in cancer metastasis

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Myeonghun Cho, Byungkyu Park, Kyungsook Han
Database, Volume 2026, 2026, baag026, https://doi.org/10.1093/database/baag026
Published: 19 May 2026