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Journal Article
ARTS-DB 2.0: an expanded database for target-directed genome mining across bacteria and fungi
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Turgut Mesut Yılmaz, Semih Erdogmus, Caner Bağcı, Nadine Ziemert
Database, Volume 2026, 2026, baag060, https://doi.org/10.1093/database/baag060
Published: 25 September 2026
Journal Article
KitBase Expanded: An Integrated Genomic and Phenotypic Resource for 3,268 Fast-Neutron-Irradiated Rice Mutants
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Artur Teixeira de Araujo, Jr, Rashmi Jain, Deling Ruan, Mawsheng Chern, Nguyen Ho, Rohan Bhushan Jhingan, Guotian Li, Phat Q Duong, Maria Florencia Ercoli, Pamela C Ronald
Database, Volume 2026, 2026, baag024, https://doi.org/10.1093/database/baag024
Published: 12 June 2026
Journal Article
PASS2: update of database of structure-based sequence alignments
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Revathy Menon, Soumya Nayak, Rama Rajesh, Ramanathan Sowdhamini
Database, Volume 2025, 2025, baaf072, https://doi.org/10.1093/database/baaf072
Published: 13 November 2025
Journal Article
ENcyclopedia of TRAnscription Factors in Bacteria and Archaea genomes (ENTRAF) version 2.0
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Silvia Tenorio-Salgado, Cinthia Rodríguez Maya, Edgardo Galan-Vasquez, André Borges Farias, Dulce Álvarez-López, Jose Luis Villalpando-Aguilar, Alberto J Martin, Leonardo Ledesma-Dominguez, Ernesto Perez-Rueda
Database, Volume 2025, 2025, baaf071, https://doi.org/10.1093/database/baaf071
Published: 29 October 2025
Journal Article
GExplore 1.5: a comprehensive Caenorhabditis elegans database for the analysis of gene function with a new user-friendly web interface
PDF
Harald Hutter, Mehrdad Moosavi, Nelly Mafi
Database, Volume 2025, 2025, baaf044, https://doi.org/10.1093/database/baaf044
Published: 24 September 2025
Journal Article
GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database
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Sarthak Joshi, Shailendu Mohapatra, Dhwani Kumar, Adwait Joshi, Meenakshi Iyer, Ramanathan Sowdhamini
Database, Volume 2025, 2025, baaf035, https://doi.org/10.1093/database/baaf035
Published: 09 May 2025
Journal Article
GeniePool 2.0: advancing variant analysis through CHM13-T2T, AlphaMissense, gnomAD V4 integration, and variant co-occurrence queries
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Grisha Weintraub, Noam Hadar, Ehud Gudes, Shlomi Dolev, Ohad S Birk
Database, Volume 2024, 2024, baae130, https://doi.org/10.1093/database/baae130
Published: 27 December 2024
Journal Article
Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update
PDF
Gabriel Cabas-Mora, Anamaría Daza, Nicole Soto-García, Valentina Garrido, Diego Alvarez, Marcelo Navarrete, Lindybeth Sarmiento-Varón, Julieta H Sepúlveda Yañez, Mehdi D Davari, Frederic Cadet, Álvaro Olivera-Nappa, Roberto Uribe-Paredes, David Medina-Ortiz
Database, Volume 2024, 2024, baae113, https://doi.org/10.1093/database/baae113
Published: 08 November 2024
Journal Article
CO-19 PDB 2.0: A Comprehensive COVID-19 Database with Global Auto-Alerts, Statistical Analysis, and Cancer Correlations
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Shahid Ullah, Yingmei Li, Wajeeha Rahman, Farhan Ullah, Muhammad Ijaz, Anees Ullah, Gulzar Ahmad, Hameed Ullah, Tianshun Gao
Database, Volume 2024, 2024, baae072, https://doi.org/10.1093/database/baae072
Published: 26 July 2024
Journal Article
FishTEDB 2.0: an update fish transposable element (TE) database with new functions to facilitate TE research
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Feng Shao, Minzhi Zeng, Xiaofei Xu, Huahao Zhang, Zuogang Peng
Database, Volume 2024, 2024, baae044, https://doi.org/10.1093/database/baae044
Published: 03 June 2024
Journal Article
Improved insights into the SABIO-RK database via visualization
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Dorotea Dudaš, Ulrike Wittig, Maja Rey, Andreas Weidemann, Wolfgang Müller
Database, Volume 2023, 2023, baad011, https://doi.org/10.1093/database/baad011
Published: 31 March 2023
Journal Article
BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images
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Nadia Brancati, Anna Maria Anniciello, Pushpak Pati, Daniel Riccio, Giosuè Scognamiglio, Guillaume Jaume, Giuseppe De Pietro, Maurizio Di Bonito, Antonio Foncubierta, Gerardo Botti, Maria Gabrani, Florinda Feroce, Maria Frucci
Database, Volume 2022, 2022, baac093, https://doi.org/10.1093/database/baac093
Published: 17 October 2022
Journal Article
GrainGenes: a data-rich repository for small grains genetics and genomics
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Eric Yao, Victoria C Blake, Laurel Cooper, Charlene P Wight, Steve Michel, H Busra Cagirici, Gerard R Lazo, Clay L Birkett, David J Waring, Jean-Luc Jannink, Ian Holmes, Amanda J Waters, David P Eickholt, Taner Z Sen
Database, Volume 2022, 2022, baac034, https://doi.org/10.1093/database/baac034
Published: 25 May 2022
Journal Article
SynLethDB 2.0: a web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery
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Jie Wang, Min Wu, Xuhui Huang, Li Wang, Sophia Zhang, Hui Liu, Jie Zheng
Database, Volume 2022, 2022, baac030, https://doi.org/10.1093/database/baac030
Published: 14 May 2022
Journal Article
TMC-SNPdb 2.0: an ethnic-specific database of Indian germline variants
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Sanket Desai, Rohit Mishra, Suhail Ahmad, Supriya Hait, Asim Joshi, Amit Dutt
Database, Volume 2022, 2022, baac029, https://doi.org/10.1093/database/baac029
Published: 11 May 2022
Journal Article
PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe
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Teerna Bhattacharyya, Soumya Nayak, Smit Goswami, Vasundhara Gadiyaram, Oommen K Mathew, Ramanathan Sowdhamini
Database, Volume 2022, 2022, baac025, https://doi.org/10.1093/database/baac025
Published: 12 April 2022
Journal Article
The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation
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Gaston K Mazandu, Jade Hotchkiss, Victoria Nembaware, Ambroise Wonkam, Nicola Mulder, Sickle Cell Disease Ontology Working Group
Database, Volume 2022, 2022, baac014, https://doi.org/10.1093/database/baac014
Published: 01 April 2022
Journal Article
Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration
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Dhouha Grissa, Alexander Junge, Tudor I Oprea, Lars Juhl Jensen
Database, Volume 2022, 2022, baac019, https://doi.org/10.1093/database/baac019
Published: 24 March 2022
Journal Article
Anti-CRISPRdb v2.2: an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins
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Chuan Dong, Xin Wang, Cong Ma, Zhi Zeng, Dong-Kai Pu, Shuo Liu, Candy-S Wu, Shixin Chen, Zixin Deng, Feng-Biao Guo
Database, Volume 2022, 2022, baac010, https://doi.org/10.1093/database/baac010
Published: 04 March 2022
Journal Article
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins
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Neha V Kalmankar, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Database, Volume 2022, 2022, baac005, https://doi.org/10.1093/database/baac005
Published: 01 March 2022