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Journal Article

STING-ExositeDB: An AI-assisted curated database of protein exosites for drug discovery

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Folorunsho Bright Omage, Ivan Mazoni, Inácio Henrique Yano, Goran Neshich
Database, Volume 2026, 2026, baag031, https://doi.org/10.1093/database/baag031
Published: 28 July 2026
Journal Article

GUTAID: a curated database linking gut microbial antigens to autoimmune mechanisms

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Laibah Hashmi, Shoaib Ur Rehman, Farzana Jabeen, Masood Ur Rehman Kayani
Database, Volume 2026, 2026, baag029, https://doi.org/10.1093/database/baag029
Published: 03 June 2026
Journal Article

FAD: a comprehensive database merging information about food allergens

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Wafa Mokhtari, Souad Khemili-Talbi, Jean Kwasigroch, Dimitri Gilis
Database, Volume 2026, 2026, baag028, https://doi.org/10.1093/database/baag028
Published: 27 May 2026
Journal Article

VarStack2—an interactive web tool for somatic variant interpretation in cancer

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Nitin Sreekumar, Benjamin J Ahn, Shulan Tian, Alper Uzun, Ece D Gamsiz Uzun
Database, Volume 2026, 2026, baag016, https://doi.org/10.1093/database/baag016
Published: 11 April 2026
Journal Article

MASH-GA: a manually curated cross-species transcriptomic database for metabolic-associated steatohepatitis

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Yong Wang, Ke Ding, Beicheng Sun, Qingxiang Xu, Weiting Zheng, Lei Liu, Jian Wang, Kanghui Liu, Jinyao Zhang, Wenjie Zhang
Database, Volume 2026, 2026, baag013, https://doi.org/10.1093/database/baag013
Published: 02 April 2026
Journal Article

IsoProDB: an integrated map of human protein isoforms for accelerated research

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Sreelakshmi Pathappillil Soman, Samseera Ummar, Muktar Ahmed, Prathik Basthikoppa Shivamurthy, Sourav Sreelan, Poornima Ramesh, Mahammad Nisar, Yashwanth Subbannayya, Rajesh Raju
Database, Volume 2026, 2026, baag015, https://doi.org/10.1093/database/baag015
Published: 26 March 2026
Journal Article

scDrugAtlas: an integrative single-cell drug response database for dissecting tumour heterogeneity in therapeutic efficacy

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Yanfei Wu, Wei Huang, Xinda Ren, Hui Liu, Ling Xu
Database, Volume 2026, 2026, baag010, https://doi.org/10.1093/database/baag010
Published: 20 February 2026
Journal Article

neomerDB: a comprehensive database of neomer biomarkers in cancer

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Kimonas Provatas, Candace S Y Chan, Ioannis Kerasiotis, Eleftherios Bochalis, Akshatha Nayak, Brad E Zacharia, Georgios A Pavlopoulos, Wei Li, Ilias Georgakopoulos-Soares
Database, Volume 2026, 2026, baag006, https://doi.org/10.1093/database/baag006
Published: 12 February 2026
Journal Article

ProteoformDB: an integrative database for functional roles of proteoforms

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Hanwen Luo, Sichao Qiu, Maozu Guo, Beibei Xin, Jun Wang, Guoxian Yu
Database, Volume 2026, 2026, baag005, https://doi.org/10.1093/database/baag005
Published: 09 February 2026
Journal Article

predicTox: an integrated database of clinical risk frequencies and human gene expression signatures for cardiotoxic drugs

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Jens Hansen, Pedro Martinez, Arjun S Yadaw, Yuguang Xiong, Rebecca Racz, Michael R Pacanowski, Laura L Hopkins, Nicholas M P King, Darrell Abernethy, Eric Sobie, Ravi Iyengar
Database, Volume 2026, 2026, baag003, https://doi.org/10.1093/database/baag003
Published: 02 February 2026
Journal Article

H-SPAR DB: human spaceflight platform for analysis and research—an integrative omics database for space health

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Marios Tomazou, Marilena M Bourdakou, Eleni Nicolaidou, Grigoris Georgiou, Kyriaki Savva, Efi Athieniti, Styliana Menelaou, Sotiroula Afxenti, George M Spyrou
Database, Volume 2026, 2026, baaf083, https://doi.org/10.1093/database/baaf083
Published: 15 January 2026
Journal Article

SynVectorDB: embedding-based retrieval system for synthetic biology parts

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Hao Li, Jiani Hu, Jie Song, Wei Zhou
Database, Volume 2026, 2026, baaf088, https://doi.org/10.1093/database/baaf088
Published: 15 January 2026
Journal Article

Genomic Predicted cross performance: a tool for optimizing parental combinations in breeding programs

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Christine Nyaga, Marlee R Labroo, Agre Paterne, Asrat Asfaw, Marnin D Wolfe, Isaak Yosief Tecle, Lukas A Mueller
Database, Volume 2025, 2025, baaf074, https://doi.org/10.1093/database/baaf074
Published: 17 November 2025
Journal Article

ROSBASE1.0: a comprehensive database of reactive oxygen species (ROS): categorization of cell organelles, proteins, taxonomy, and diseases based on ROS-related activities

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Sharayu Ghodeswar, Debashree Bandyopadhyay
Database, Volume 2025, 2025, baaf069, https://doi.org/10.1093/database/baaf069
Published: 31 October 2025
Journal Article

SEND: a suite of tools for the easy sharing of linked biological data

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Rodolfo S Allendes Osorio, Yi-An Chen, Kenji Mizuguchi
Database, Volume 2025, 2025, baaf068, https://doi.org/10.1093/database/baaf068
Published: 29 October 2025
Journal Article

Zoonosis: a comprehensive database of zoonotic pathogens

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Boyuan Zhang, Dan Liu, Weiwen Wang, Xiaoqiang Li, Yifei Xie, Huitong Li, Hongmei Zhou, Jianshuai Gao, Hui Jiang, Xuezheng Fan, Jiabo Ding, Qingchun Shen, Xizheng Ma
Database, Volume 2025, 2025, baaf062, https://doi.org/10.1093/database/baaf062
Published: 15 October 2025
Journal Article

A new database of chestnut DNA fingerprints for genetic diversity assessment, precise varietal identification, and traceability

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Ivan Fruggiero, Alessandro Maisto, Sara Passaro, Domenico Gentile, Angelina Nunziata, Nunzio D’Agostino
Database, Volume 2025, 2025, baaf056, https://doi.org/10.1093/database/baaf056
Published: 24 September 2025
Journal Article

Empirical substitution models of protein evolution: database, relationships, and modeling considerations

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Paula Iglesias-Rivas, Roberto Del Amparo, Javier A Cabaleiro, Miguel Arenas
Database, Volume 2025, 2025, baaf052, https://doi.org/10.1093/database/baaf052
Published: 24 September 2025
Journal Article

STCDB4ND: a signal transduction classification database for neurological diseases

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Boyan Gong, Sida Li, Yifan Chen, Liya Liu, Ralf Hofestädt, Ming Chen
Database, Volume 2025, 2025, baaf032, https://doi.org/10.1093/database/baaf032
Published: 02 May 2025
Journal Article

Mapping assays to the key characteristics of carcinogens to support decision-making

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Gabrielle Rigutto, Cliona M McHale, Ettayapuram Ramaprasad Azhagiya Singam, Iemaan Rana, Luoping Zhang, Martyn T Smith
Database, Volume 2025, 2025, baaf026, https://doi.org/10.1093/database/baaf026
Published: 22 April 2025