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Authors: Zhiyong Lu
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Journal Article

Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII

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Robert Leaman and others
Database, Volume 2023, 2023, baad005, https://doi.org/10.1093/database/baad005
Published: 07 March 2023
Journal Article

NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles

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Rezarta Islamaj and others
Database, Volume 2022, 2022, baac102, https://doi.org/10.1093/database/baac102
Published: 01 December 2022
Journal Article

Assigning species information to corresponding genes by a sequence labeling framework

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Ling Luo and others
Database, Volume 2022, 2022, baac090, https://doi.org/10.1093/database/baac090
Published: 13 October 2022
Journal Article

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

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Qingyu Chen and others
Database, Volume 2022, 2022, baac069, https://doi.org/10.1093/database/baac069
Published: 31 August 2022
Journal Article

A roadmap for the functional annotation of protein families: a community perspective

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Valérie de Crécy-lagard and others
Database, Volume 2022, 2022, baac062, https://doi.org/10.1093/database/baac062
Published: 12 August 2022
Journal Article

A sequence labeling framework for extracting drug–protein relations from biomedical literature

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Ling Luo and others
Database, Volume 2022, 2022, baac058, https://doi.org/10.1093/database/baac058
Published: 20 July 2022
Journal Article

PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database

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Rezarta Islamaj and others
Database, Volume 2019, 2019, baz064, https://doi.org/10.1093/database/baz064
Published: 02 July 2019
Journal Article

Using deep learning to identify translational research in genomic medicine beyond bench to bedside

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Yi-Yu Hsu and others
Database, Volume 2019, 2019, baz010, https://doi.org/10.1093/database/baz010
Published: 08 February 2019
Journal Article

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

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Rezarta Islamaj Doğan and others
Database, Volume 2019, 2019, bay147, https://doi.org/10.1093/database/bay147
Published: 28 January 2019
Journal Article

Overview of the BioCreative VI text-mining services for Kinome Curation Track

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Julien Gobeill and others
Database, Volume 2018, 2018, bay104, https://doi.org/10.1093/database/bay104
Published: 17 October 2018
Journal Article

Assisting document triage for human kinome curation via machine learning

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Yi-Yu Hsu and others
Database, Volume 2018, 2018, bay091, https://doi.org/10.1093/database/bay091
Published: 18 September 2018
Journal Article

PubMed Labs: an experimental system for improving biomedical literature search

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Nicolas Fiorini and others
Database, Volume 2018, 2018, bay094, https://doi.org/10.1093/database/bay094
Published: 18 September 2018
Journal Article

Extracting chemical–protein relations with ensembles of SVM and deep learning models

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Yifan Peng and others
Database, Volume 2018, 2018, bay073, https://doi.org/10.1093/database/bay073
Published: 17 July 2018
Journal Article

A Field Sensor: computing the composition and intent of PubMed queries

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Lana Yeganova and others
Database, Volume 2018, 2018, bay052, https://doi.org/10.1093/database/bay052
Published: 12 July 2018
Journal Article

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

Ayush Singhal and others
Database, Volume 2016, 2016, baw161, https://doi.org/10.1093/database/baw161
Published: 26 December 2016
Journal Article

Overview of the interactive task in BioCreative V

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Qinghua Wang and others
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Published: 01 September 2016
Journal Article

Mining chemical patents with an ensemble of open systems

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Robert Leaman and others
Database, Volume 2016, 2016, baw065, https://doi.org/10.1093/database/baw065
Published: 12 May 2016
Journal Article

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

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Jiao Li and others
Database, Volume 2016, 2016, baw068, https://doi.org/10.1093/database/baw068
Published: 08 May 2016
Journal Article

Discovering biomedical semantic relations in PubMed queries for information retrieval and database curation

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Chung-Chi Huang and Zhiyong Lu
Database, Volume 2016, 2016, baw025, https://doi.org/10.1093/database/baw025
Published: 25 March 2016
Journal Article

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

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Chih-Hsuan Wei and others
Database, Volume 2016, 2016, baw032, https://doi.org/10.1093/database/baw032
Published: 19 March 2016