Authors: Wen-Lian Hsu
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Journal Article

A BERT-based ensemble learning approach for the BioCreative VII challenges: full-text chemical identification and multi-label classification in PubMed articles

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Sheng-Jie Lin, Wen-Chao Yeh, Yu-Wen Chiu, Yung-Chun Chang, Min-Huei Hsu, Yi-Shin Chen, Wen-Lian Hsu
Database, Volume 2022, 2022, baac056, https://doi.org/10.1093/database/baac056
Published: 15 July 2022
Journal Article

Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature

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Hong-Jie Dai, Chen-Kai Wang, Nai-Wen Chang, Ming-Siang Huang, Jitendra Jonnagaddala, Feng-Duo Wang, Wen-Lian Hsu
Database, Volume 2019, 2019, baz030, https://doi.org/10.1093/database/baz030
Published: 27 February 2019
Journal Article

LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task

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Neha Warikoo, Yung-Chun Chang, Wen-Lian Hsu
Database, Volume 2018, 2018, bay108, https://doi.org/10.1093/database/bay108
Published: 22 October 2018
Journal Article

Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy

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Nai-Wen Chang, Hong-Jie Dai, Yung-Yu Shih, Chi-Yang Wu, Mira Anne C Dela Rosa, Rofeamor P Obena, Yu-Ju Chen, Wen-Lian Hsu, Yen-Jen Oyang
Database, Volume 2017, 2017, bax082, https://doi.org/10.1093/database/bax082
Published: 08 December 2017
Journal Article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article

PIPE: a protein–protein interaction passage extraction module for BioCreative challenge

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Yung-Chun Chang, Chun-Han Chu, Yu-Chen Su, Chien Chin Chen, Wen-Lian Hsu
Database, Volume 2016, 2016, baw101, https://doi.org/10.1093/database/baw101
Published: 14 August 2016
Journal Article

MET network in PubMed: a text-mined network visualization and curation system

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Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Shabbir Syed-Abdul, Wen-Lian Hsu
Database, Volume 2016, 2016, baw090, https://doi.org/10.1093/database/baw090
Published: 30 May 2016
Journal Article

LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations

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Hong-Jie Dai, Johnny Chi-Yang Wu, Wei-San Lin, Aaron James F. Reyes, Mira Anne C. dela Rosa, Shabbir Syed-Abdul, Richard Tzong-Han Tsai, Wen-Lian Hsu
Database, Volume 2014, 2014, bau085, https://doi.org/10.1093/database/bau085
Published: 27 August 2014
Journal Article

T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes

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Hong-Jie Dai, Johnny Chi-Yang Wu, Richard Tzong-Han Tsai, Wen-Harn Pan, Wen-Lian Hsu
Database, Volume 2013, 2013, bas061, https://doi.org/10.1093/database/bas061
Published: 12 February 2013