Authors: W. John Wilbur
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Journal Article

PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database

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Rezarta Islamaj, W John Wilbur, Natalie Xie, Noreen R Gonzales, Narmada Thanki, Roxanne Yamashita, Chanjuan Zheng, Aron Marchler-Bauer, Zhiyong Lu
Database, Volume 2019, 2019, baz064, https://doi.org/10.1093/database/baz064
Published: 02 July 2019
Journal Article

A Field Sensor: computing the composition and intent of PubMed queries

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Lana Yeganova, Won Kim, Donald C Comeau, W John Wilbur, Zhiyong Lu
Database, Volume 2018, 2018, bay052, https://doi.org/10.1093/database/bay052
Published: 12 July 2018
Journal Article

The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

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Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, W. John Wilbur, Donald C. Comeau, Kara Dolinski, Mike Tyers
Database, Volume 2017, 2017, baw147, https://doi.org/10.1093/database/baw147
Published: 10 January 2017
Journal Article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article

BioC viewer: a web-based tool for displaying and merging annotations in BioC

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Soo-Yong Shin, Sun Kim, W. John Wilbur, Dongseop Kwon
Database, Volume 2016, 2016, baw106, https://doi.org/10.1093/database/baw106
Published: 10 August 2016
Journal Article

Assisting manual literature curation for protein–protein interactions using BioQRator

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Dongseop Kwon, Sun Kim, Soo-Yong Shin, Andrew Chatr-aryamontri, W. John Wilbur
Database, Volume 2014, 2014, bau067, https://doi.org/10.1093/database/bau067
Published: 21 July 2014
Journal Article

BioC interoperability track overview

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Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Doğan, Antonio Jimeno Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2014, 2014, bau053, https://doi.org/10.1093/database/bau053
Published: 28 June 2014
Journal Article

BioC implementations in Go, Perl, Python and Ruby

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Wanli Liu, Rezarta Islamaj Doğan, Dongseop Kwon, Hernani Marques, Fabio Rinaldi, W. John Wilbur, Donald C. Comeau
Database, Volume 2014, 2014, bau059, https://doi.org/10.1093/database/bau059
Published: 23 June 2014
Journal Article

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

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Donald C. Comeau, Haibin Liu, Rezarta Islamaj Doğan, W. John Wilbur
Database, Volume 2014, 2014, bau056, https://doi.org/10.1093/database/bau056
Published: 15 June 2014
Journal Article

Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora

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Rezarta Islamaj Doğan, Donald C. Comeau, Lana Yeganova, W. John Wilbur
Database, Volume 2014, 2014, bau044, https://doi.org/10.1093/database/bau044
Published: 09 June 2014
Journal Article

BioC: a minimalist approach to interoperability for biomedical text processing

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Donald C. Comeau, Rezarta Islamaj Doğan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2013, 2013, bat064, https://doi.org/10.1093/database/bat064
Published: 18 September 2013
Journal Article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

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Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila Dahdul, Paula Mabee, Donghui Li, Bethany Harris, Marc Gillespie, Silvia Jimenez, Phoebe Roberts, Lisa Matthews, Kevin Becker, Harold Drabkin … Cathy Wu
Database, Volume 2013, 2013, bas056, https://doi.org/10.1093/database/bas056
Published: 16 January 2013
Journal Article

BioCreative-2012 Virtual Issue

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Cathy H. Wu, Cecilia N. Arighi, Kevin B. Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
Database, Volume 2012, 2012, bas049, https://doi.org/10.1093/database/bas049
Published: 05 December 2012
Journal Article

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

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Sun Kim, Won Kim, Chih-Hsuan Wei, Zhiyong Lu, W. John Wilbur
Database, Volume 2012, 2012, bas042, https://doi.org/10.1093/database/bas042
Published: 15 November 2012
Journal Article

Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE

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Aurélie Névéol, W. John Wilbur, Zhiyong Lu
Database, Volume 2012, 2012, bas026, https://doi.org/10.1093/database/bas026
Published: 08 June 2012