Authors: The BrAPI Consortium
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Journal Article

The INSDC specifications—foundations for a FAIR and global INSDC

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Yuichi Kodama, Colman O’Cathail, Linda Yankie, the INSDC Implementation Committee
Database, Volume 2026, 2026, baag054, https://doi.org/10.1093/database/baag054
Published: 07 September 2026
Journal Article

BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community

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Peter Selby, Rafael Abbeloos, Anne-Francoise Adam-Blondon, Francisco J Agosto-Pérez, Michael Alaux, Isabelle Alic, Khaled Al-Shamaa, Johan Steven Aparicio, Jan Erik Backlund, Aldrin Batac, Sebastian Beier, Gabriel Besombes, Alice Boizet, Matthijs Brouwer, Terry Casstevens, Arnaud Charleroy, Keo Corak, Chaney Courtney, Mariano Crimi … The BrAPI Consortium
Database, Volume 2025, 2025, baaf048, https://doi.org/10.1093/database/baaf048
Published: 24 September 2025
Journal Article

The Microbe Directory: a centralized database for biological interpretation of microbiome data

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Maria A Sierra, Krista Ryon, Mohith R Arikatla, Radwa Elshafey, Hardik Bhaskar, Jacqueline Proszynski, Chandrima Bhattacharya, Heba Shaaban, David C Danko, Pradeep Ambrose, Sarah A Spaulding, Maria Mercedes Zambrano, The Microbe Directory Consortium, Christopher E Mason
Database, Volume 2025, 2025, baaf060, https://doi.org/10.1093/database/baaf060
Published: 24 September 2025
Journal Article

Global Globin Network and adopting genomic variant database requirements for thalassemia

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Hashim Halim-Fikri, Ninie Nadia Zulkipli, Hafiza Alauddin, Celeste Bento, Carsten W Lederer, Petros Kountouris, Marina Kleanthous, Yetti Hernaningsih, Meow-Keong Thong, Muhammad Hamdi Mahmood, Norafiza Mohd Yasin, Ezalia Esa, Jacques Elion, Domenico Coviello, Raja-Zahratul-Azma Raja-Sabudin, Ghada El-Kamah, John Burn, Narazah Mohd Yusoff, Raj Ramesar … on behalf of the Global Globin Network (GGN)
Database, Volume 2024, 2024, baae080, https://doi.org/10.1093/database/baae080
Published: 04 September 2024
Journal Article

SpadaHC: a database to improve the classification of variants in hereditary cancer genes in the Spanish population

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José M Moreno-Cabrera, Lidia Feliubadaló, Marta Pineda, Patricia Prada-Dacasa, Mireia Ramos-Muntada, Jesús Del Valle, Joan Brunet, Bernat Gel, María Currás-Freixes, Bruna Calsina, Milton E Salazar-Hidalgo, Marta Rodríguez-Balada, Bàrbara Roig, Sara Fernández-Castillejo, Mercedes Durán Domínguez, Mónica Arranz Ledo, Mar Infante Sanz, Adela Castillejo, Estela Dámaso … Conxi Lázaro
Database, Volume 2024, 2024, baae055, https://doi.org/10.1093/database/baae055
Published: 04 July 2024
Journal Article

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences

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Cecilia H Deng, Sushma Naithani, Sunita Kumari, Irene Cobo-Simón, Elsa H Quezada-Rodríguez, Maria Skrabisova, Nick Gladman, Melanie J Correll, Akeem Babatunde Sikiru, Olusola O Afuwape, Annarita Marrano, Ines Rebollo, Wentao Zhang, Sook Jung, On behalf of the Genotype-Phenotype Working Group, AgBioData
Database, Volume 2023, 2023, baad088, https://doi.org/10.1093/database/baad088
Published: 11 December 2023
Journal Article

Semi-automatic translation of medicine usage data (in Dutch, free-text) from Lifelines COVID-19 questionnaires to ATC codes

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Alexander J Kellmann, Pauline Lanting, Lude Franke, Esther J van Enckevort, Morris A Swertz, on behalf of the Lifelines Corona Research Initiative, the Lifelines Cohort Study
Database, Volume 2023, 2023, baad019, https://doi.org/10.1093/database/baad019
Published: 26 April 2023
Journal Article

Erratum to: Large expert-curated database for benchmarking document similarity detection in biomedical literature search

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Peter Brown, RELISH Consortium, Yaoqi Zhou
Database, Volume 2020, 2020, baz138, https://doi.org/10.1093/database/baz138
Published: 18 July 2020
Journal Article

Automated generation of gene summaries at the Alliance of Genome Resources

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Ranjana Kishore, Valerio Arnaboldi, Ceri E Van Slyke, Juancarlos Chan, Robert S Nash, Jose M Urbano, Mary E Dolan, Stacia R Engel, Mary Shimoyama, Paul W Sternberg, the Alliance of Genome Resources
Database, Volume 2020, 2020, baaa037, https://doi.org/10.1093/database/baaa037
Published: 19 June 2020
Journal Article

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

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Peter Brown, RELISH Consortium, Yaoqi Zhou
Database, Volume 2019, 2019, baz085, https://doi.org/10.1093/database/baz085
Published: 29 October 2019
Journal Article

Integration of macromolecular complex data into the Saccharomyces Genome Database

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Edith D Wong, Marek S Skrzypek, Shuai Weng, Gail Binkley, Birgit H M Meldal, Livia Perfetto, Sandra E Orchard, Stacia R Engel, J Michael Cherry, the SGD Project
Database, Volume 2019, 2019, baz008, https://doi.org/10.1093/database/baz008
Published: 04 February 2019
Journal Article

Annotation of gene product function from high-throughput studies using the Gene Ontology

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Helen Attrill, Pascale Gaudet, Rachael P Huntley, Ruth C Lovering, Stacia R Engel, Sylvain Poux, Kimberly M Van Auken, George Georghiou, Marcus C Chibucos, Tanya Z Berardini, Valerie Wood, Harold Drabkin, Petra Fey, Penelope Garmiri, Midori A Harris, Tony Sawford, Leonore Reiser, Rebecca Tauber, Sabrina Toro, The Gene Ontology Consortium
Database, Volume 2019, 2019, baz007, https://doi.org/10.1093/database/baz007
Published: 01 February 2019
Journal Article

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

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Hans Ienasescu, Kang Li, Robin Andersson, Morana Vitezic, Sarah Rennie, Yun Chen, Kristoffer Vitting-Seerup, Emil Lagoni, Mette Boyd, Jette Bornholdt, Michiel J. L. de Hoon, Hideya Kawaji, Timo Lassmann, The FANTOM Consortium, Yoshihide Hayashizaki, Alistair R. R. Forrest, Piero Carninci, Albin Sandelin
Database, Volume 2016, 2016, baw144, https://doi.org/10.1093/database/baw144
Published: 26 December 2016
Journal Article

Establishment of Kawasaki disease database based on metadata standard

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Yu Rang Park, Jae-Jung Kim, Young Jo Yoon, Young-Kwang Yoon, Ha Yeong Koo, Young Mi Hong, Gi Young Jang, Soo-Yong Shin, Jong-Keuk Lee, on behalf of the Korean Kawasaki Disease Genetics Consortium
Database, Volume 2016, 2016, baw109, https://doi.org/10.1093/database/baw109
Published: 26 July 2016
Journal Article

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

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Imad Abugessaisa, Hisashi Shimoji, Serkan Sahin, Atsushi Kondo, Jayson Harshbarger, Marina Lizio, Yoshihide Hayashizaki, Piero Carninci, The FANTOM consortium, Alistair Forrest, Takeya Kasukawa, Hideya Kawaji
Database, Volume 2016, 2016, baw105, https://doi.org/10.1093/database/baw105
Published: 09 July 2016
Journal Article

The UniProtKB guide to the human proteome

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Lionel Breuza, Sylvain Poux, Anne Estreicher, Maria Livia Famiglietti, Michele Magrane, Michael Tognolli, Alan Bridge, Delphine Baratin, Nicole Redaschi, The UniProt Consortium
Database, Volume 2016, 2016, bav120, https://doi.org/10.1093/database/bav120
Published: 19 February 2016
Journal Article

EpiFactors: a comprehensive database of human epigenetic factors and complexes

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Yulia A. Medvedeva, Andreas Lennartsson, Rezvan Ehsani, Ivan V. Kulakovskiy, Ilya E. Vorontsov, Pouda Panahandeh, Grigory Khimulya, Takeya Kasukawa, The FANTOM Consortium, Finn Drabløs
Database, Volume 2015, 2015, bav067, https://doi.org/10.1093/database/bav067
Published: 07 July 2015
Journal Article

Standard development at the Human Variome Project

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Timothy D. Smith, Mauno Vihinen, on Behalf of the Human Variome Project
Database, Volume 2015, 2015, bav024, https://doi.org/10.1093/database/bav024
Published: 26 March 2015
Journal Article

HGV&TB: a comprehensive online resource on human genes and genetic variants associated with tuberculosis

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Ruchika Sahajpal, Gaurav Kandoi, Heena Dhiman, Sweety Raj, Open Source Drug Discovery Consortium, Vinod Scaria, Deeksha Bhartiya, Yasha Hasija
Database, Volume 2014, 2014, bau112, https://doi.org/10.1093/database/bau112
Published: 13 December 2014
Journal Article

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles

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Juan Miguel Cejuela, Peter McQuilton, Laura Ponting, Steven J. Marygold, Raymund Stefancsik, Gillian H. Millburn, Burkhard Rost, the FlyBase Consortium
Database, Volume 2014, 2014, bau033, https://doi.org/10.1093/database/bau033
Published: 07 April 2014