Authors: Tanya Z. Berardini
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Journal Article

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

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Jennifer L Clarke, Laurel D Cooper, Monica F Poelchau, Tanya Z Berardini, Justin Elser, Andrew D Farmer, Stephen Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T Nelson, Rie Sadohara, Peter Selby, Anne E Thessen, Brandon Whitehead, Taner Z Sen
Database, Volume 2023, 2023, baad076, https://doi.org/10.1093/database/baad076
Published: 16 November 2023
Journal Article

Annotation of gene product function from high-throughput studies using the Gene Ontology

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Helen Attrill, Pascale Gaudet, Rachael P Huntley, Ruth C Lovering, Stacia R Engel, Sylvain Poux, Kimberly M Van Auken, George Georghiou, Marcus C Chibucos, Tanya Z Berardini, Valerie Wood, Harold Drabkin, Petra Fey, Penelope Garmiri, Midori A Harris, Tony Sawford, Leonore Reiser, Rebecca Tauber, Sabrina Toro, The Gene Ontology Consortium
Database, Volume 2019, 2019, baz007, https://doi.org/10.1093/database/baz007
Published: 01 February 2019
Journal Article

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

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Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, Ramona Walls, Carson Andorf, Elizabeth Arnaud, Tanya Z Berardini, Clayton Birkett, Steve Cannon, James Carson, Bradford Condon, Laurel Cooper, Nathan Dunn, Christine G Elsik, Andrew Farmer, Stephen P Ficklin, David Grant … Doreen Main
Database, Volume 2018, 2018, bay088, https://doi.org/10.1093/database/bay088
Published: 18 September 2018
Journal Article

Modeling biochemical pathways in the gene ontology

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David P. Hill, Peter D’Eustachio, Tanya Z. Berardini, Christopher J. Mungall, Nikolai Renedo, Judith A. Blake
Database, Volume 2016, 2016, baw126, https://doi.org/10.1093/database/baw126
Published: 01 September 2016
Journal Article

Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model

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Leonore Reiser, Tanya Z. Berardini, Donghui Li, Robert Muller, Emily M. Strait, Qian Li, Yarik Mezheritsky, Andrey Vetushko, Eva Huala
Database, Volume 2016, 2016, baw018, https://doi.org/10.1093/database/baw018
Published: 17 March 2016
Journal Article

Building an efficient curation workflow for the Arabidopsis literature corpus

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Donghui Li, Tanya Z. Berardini, Robert J. Muller, Eva Huala
Database, Volume 2012, 2012, bas047, https://doi.org/10.1093/database/bas047
Published: 06 December 2012
Journal Article

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

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Kimberly Van Auken, Petra Fey, Tanya Z. Berardini, Robert Dodson, Laurel Cooper, Donghui Li, Juancarlos Chan, Yuling Li, Siddhartha Basu, Hans-Michael Muller, Rex Chisholm, Eva Huala, Paul W. Sternberg, the WormBase Consortium
Database, Volume 2012, 2012, bas040, https://doi.org/10.1093/database/bas040
Published: 15 November 2012
Journal Article

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

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Chih-Hsuan Wei, Bethany R. Harris, Donghui Li, Tanya Z. Berardini, Eva Huala, Hung-Yu Kao, Zhiyong Lu
Database, Volume 2012, 2012, bas041, https://doi.org/10.1093/database/bas041
Published: 15 November 2012
Journal Article

Assessment of community-submitted ontology annotations from a novel database-journal partnership

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Tanya Z. Berardini, Donghui Li, Robert Muller, Raymond Chetty, Larry Ploetz, Shanker Singh, April Wensel, Eva Huala
Database, Volume 2012, 2012, bas030, https://doi.org/10.1093/database/bas030
Published: 01 August 2012
Journal Article

Biocurators and Biocuration: surveying the 21st century challenges

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Sarah Burge, Teresa K. Attwood, Alex Bateman, Tanya Z. Berardini, Michael Cherry, Claire O'Donovan, loannis Xenarios, Pascale Gaudet
Database, Volume 2012, 2012, bar059, https://doi.org/10.1093/database/bar059
Published: 13 February 2012