Authors: Suzanna E. Lewis
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Journal Article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

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Rebecca Jackson, Nicolas Matentzoglu, James A Overton, Randi Vita, James P Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D Diehl, Damion M Dooley, William D Duncan, Nomi L Harris, Melissa A Haendel, Suzanna E Lewis, Darren A Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M Schriml, Barry Smith … Bjoern Peters
Database, Volume 2021, 2021, baab069, https://doi.org/10.1093/database/baab069
Published: 26 October 2021
Journal Article

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes

Marc Feuermann, Pascale Gaudet, Huaiyu Mi, Suzanna E. Lewis, Paul D. Thomas
Database, Volume 2016, 2016, baw155, https://doi.org/10.1093/database/baw155
Published: 26 December 2016
Journal Article

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

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Frederic B. Bastian, Marcus C. Chibucos, Pascale Gaudet, Michelle Giglio, Gemma L. Holliday, Hong Huang, Suzanna E. Lewis, Anne Niknejad, Sandra Orchard, Sylvain Poux, Nives Skunca, Marc Robinson-Rechavi
Database, Volume 2015, 2015, bav043, https://doi.org/10.1093/database/bav043
Published: 09 May 2015
Journal Article

Standardized description of scientific evidence using the Evidence Ontology (ECO)

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Marcus C. Chibucos, Christopher J. Mungall, Rama Balakrishnan, Karen R. Christie, Rachael P. Huntley, Owen White, Judith A. Blake, Suzanna E. Lewis, Michelle Giglio
Database, Volume 2014, 2014, bau075, https://doi.org/10.1093/database/bau075
Published: 21 July 2014
Journal Article

The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details

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Nicole L. Washington, E. O. Stinson, Marc D. Perry, Peter Ruzanov, Sergio Contrino, Richard Smith, Zheng Zha, Rachel Lyne, Adrian Carr, Paul Lloyd, Ellen Kephart, Sheldon J. McKay, Gos Micklem, Lincoln D. Stein, Suzanna E. Lewis
Database, Volume 2011, 2011, bar023, https://doi.org/10.1093/database/bar023
Published: 19 August 2011
Journal Article

Towards BioDBcore: a community-defined information specification for biological databases

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Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock … on behalf of the BioDBCore working group
Database, Volume 2011, 2011, baq027, https://doi.org/10.1093/database/baq027
Published: 04 January 2011