Authors: Sumit Madan
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Journal Article

Dataset of miRNA–disease relations extracted from textual data using transformer-based neural networks

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Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Database, Volume 2024, 2024, baae066, https://doi.org/10.1093/database/baae066
Published: 05 August 2024
Journal Article

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track

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Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck
Database, Volume 2019, 2019, baz084, https://doi.org/10.1093/database/baz084
Published: 11 October 2019
Journal Article

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track

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Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel Peitsch, Juliane Fluck
Database, Volume 2016, 2016, baw136, https://doi.org/10.1093/database/baw136
Published: 01 October 2016
Journal Article

Overview of the interactive task in BioCreative V

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Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios Gkoutos, Afroza K. Irin, Lars J. Jensen … Cecilia N. Arighi
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Published: 01 September 2016
Journal Article

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)

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Juliane Fluck, Sumit Madan, Sam Ansari, Alpha T. Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel Peitsch
Database, Volume 2016, 2016, baw113, https://doi.org/10.1093/database/baw113
Published: 20 August 2016
Journal Article

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language

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Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian van der Lek, Theo Mevissen, Juliane Fluck
Database, Volume 2016, 2016, baw067, https://doi.org/10.1093/database/baw067
Published: 09 July 2016
Journal Article

Construction of biological networks from unstructured information based on a semi-automated curation workflow

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Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
Database, Volume 2015, 2015, bav057, https://doi.org/10.1093/database/bav057
Published: 16 June 2015