Authors: Songfeng+Wu
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Journal Article

IBDkb: an AI-enhanced integrative knowledge base for inflammatory bowel disease research and drug discovery

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Liwen Tao and others
Database, Volume 2026, 2026, baag038, https://doi.org/10.1093/database/baag038
Published: 10 July 2026
Journal Article

scDrugAtlas: an integrative single-cell drug response database for dissecting tumour heterogeneity in therapeutic efficacy

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Yanfei Wu and others
Database, Volume 2026, 2026, baag010, https://doi.org/10.1093/database/baag010
Published: 20 February 2026
Journal Article

HCoVDB: a comprehensive database encompassing viral genomes, drug targets, and therapeutics of human coronaviruses

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Pan Zhang and others
Database, Volume 2025, 2025, baaf079, https://doi.org/10.1093/database/baaf079
Published: 26 November 2025
Journal Article

CircAI: a comprehensive database of CircRNA associated with A-to-I RNA editing

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Yulan Wang and others
Database, Volume 2025, 2025, baaf075, https://doi.org/10.1093/database/baaf075
Published: 22 November 2025
Journal Article

Biomedical literature-based clinical phenotype definition discovery using large language models

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Samar Binkheder and others
Database, Volume 2025, 2025, baaf047, https://doi.org/10.1093/database/baaf047
Published: 24 September 2025
Journal Article

MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database

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Jiaojiao Zhao and others
Database, Volume 2025, 2025, baaf029, https://doi.org/10.1093/database/baaf029
Published: 21 April 2025
Journal Article

mirTarCLASH: a comprehensive miRNA target database based on chimeric read-based experiments

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Tzu-Hsien Yang and others
Database, Volume 2025, 2025, baaf023, https://doi.org/10.1093/database/baaf023
Published: 05 April 2025
Journal Article

TumorAgDB1.0: tumor neoantigen database platform

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Yan Shao and others
Database, Volume 2025, 2025, baaf010, https://doi.org/10.1093/database/baaf010
Published: 13 February 2025
Journal Article

CBGDA: a manually curated resource for gene–disease associations based on genome-wide CRISPR

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Qingsong Du and others
Database, Volume 2024, 2024, baae077, https://doi.org/10.1093/database/baae077
Published: 30 August 2024
Journal Article

ImmRNA: a database of RNAs associated with tumor immunity

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Fangfang Shen and others
Database, Volume 2024, 2024, baae052, https://doi.org/10.1093/database/baae052
Published: 06 July 2024
Journal Article

DMLS: an automated pipeline to extract the Drosophila modular transcription regulators and targets from massive literature articles

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Tzu-Hsien Yang and others
Database, Volume 2024, 2024, baae049, https://doi.org/10.1093/database/baae049
Published: 20 June 2024
Journal Article

IPAD-DB: a manually curated database for experimentally verified inhibitors of proteins associated with Alzheimer’s disease

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Chong Peng and others
Database, Volume 2024, 2024, baae048, https://doi.org/10.1093/database/baae048
Published: 12 June 2024
Journal Article

MSGD: a manually curated database of genomic, transcriptomic, proteomic and drug information for multiple sclerosis

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Tao Wu and others
Database, Volume 2024, 2024, baae037, https://doi.org/10.1093/database/baae037
Published: 24 May 2024
Journal Article

PMBC: a manually curated database for prognostic markers of breast cancer

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Jiabei Liu and others
Database, Volume 2024, 2024, baae033, https://doi.org/10.1093/database/baae033
Published: 15 May 2024
Journal Article

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

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Marija Orlic-Milacic and others
Database, Volume 2024, 2024, baae031, https://doi.org/10.1093/database/baae031
Published: 07 May 2024
Journal Article

ESKtides: a comprehensive database and mining method for ESKAPE phage-derived antimicrobial peptides

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Hongfang Wu and others
Database, Volume 2024, 2024, baae022, https://doi.org/10.1093/database/baae022
Published: 26 March 2024
Journal Article

An Inflammatory Bowel Diseases Integrated Resources Portal (IBDIRP)

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Nie Kai and others
Database, Volume 2024, 2024, baad097, https://doi.org/10.1093/database/baad097
Published: 16 January 2024
Journal Article

Neodb: a comprehensive neoantigen database and discovery platform for cancer immunotherapy

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Tao Wu and others
Database, Volume 2023, 2023, baad041, https://doi.org/10.1093/database/baad041
Published: 13 June 2023
Journal Article

PETCH-DB: a Portal for Exploring Tissue-specific and Complex disease-associated 5-Hydroxymethylcytosines

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Qinyun Cai and others
Database, Volume 2023, 2023, baad042, https://doi.org/10.1093/database/baad042
Published: 10 June 2023
Journal Article

CIGAF—a database and interactive platform for insect-associated trichomycete fungi

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Shalini Chaudhary and others
Database, Volume 2023, 2023, baad038, https://doi.org/10.1093/database/baad038
Published: 23 May 2023