Authors: Rubén+González-Miguéns
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Journal Article

Desert Plant Endophyte Genome Database: a curated repository of endophytic bacterial genomes across arid ecosystems

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Sabiha Parween, Arun Prasanna Nagarajan, Amal K Alghamdi, Abdul Aziz Eida, Feras F Lafi, Luma Albanna, Nida Salem, Barakat Abu-Irmaileh, Zaid A Pirzada, Shahid Siddique, Ruben Garrido-Oter, Paul Schulze-Lefert, Maged M Saad, Heribert Hirt
Database, Volume 2026, 2026, baag020, https://doi.org/10.1093/database/baag020
Published: 16 April 2026
Journal Article

BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community

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Peter Selby, Rafael Abbeloos, Anne-Francoise Adam-Blondon, Francisco J Agosto-Pérez, Michael Alaux, Isabelle Alic, Khaled Al-Shamaa, Johan Steven Aparicio, Jan Erik Backlund, Aldrin Batac, Sebastian Beier, Gabriel Besombes, Alice Boizet, Matthijs Brouwer, Terry Casstevens, Arnaud Charleroy, Keo Corak, Chaney Courtney, Mariano Crimi … The BrAPI Consortium
Database, Volume 2025, 2025, baaf048, https://doi.org/10.1093/database/baaf048
Published: 24 September 2025
Journal Article

Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII—Task 3 competition

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Davy Weissenbacher, Xinwei Zhao, Jessica R C Priestley, Katherine M Szigety, Sarah F Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T Ian Simpson … Graciela Gonzalez-Hernandez
Database, Volume 2025, 2025, baaf051, https://doi.org/10.1093/database/baaf051
Published: 24 September 2025
Journal Article

A novel taxonomic database for eukaryotic mitochondrial cytochrome oxidase subunit I gene (eKOI), with a focus on protists diversity

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Rubén González-Miguéns, Àlex Gàlvez-Morante, Margarita Skamnelou, Meritxell Antó, Elena Casacuberta, Daniel J Richter, Enrique Lara, Daniel Vaulot, Javier del Campo, Iñaki Ruiz-Trillo
Database, Volume 2025, 2025, baaf057, https://doi.org/10.1093/database/baaf057
Published: 24 September 2025
Journal Article

Post-composing ontology terms for efficient phenotyping in plant breeding

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Naama Menda, Bryan J Ellerbrock, Christiano C Simoes, Srikanth Kumar Karaikal, Christine Nyaga, Mirella Flores-Gonzalez, Isaak Y Tecle, David Lyon, Afolabi Agbona, Paterne A Agre, Prasad Peteti, Violet Akech, Amos Asiimwe, Eglantine Fauvelle, Karima Meghar, Thierry Tran, Dominique Dufour, Laurel Cooper, Marie-Angélique Laporte … Lukas A Mueller
Database, Volume 2025, 2025, baaf020, https://doi.org/10.1093/database/baaf020
Published: 21 March 2025
Journal Article

An online database for einkorn wheat to aid in gene discovery and functional genomics studies

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Parva Kumar Sharma, Hanin Ibrahim Ahmed, Matthias Heuberger, Dal-Hoe Koo, Jesus Quiroz-Chavez, Laxman Adhikari, John Raupp, Stéphane Cauet, Nathalie Rodde, Charlotte Cravero, Caroline Callot, Inderjit Singh Yadav, Nagarajan Kathiresan, Naveenkumar Athiyannan, Ricardo H Ramirez-Gonzalez, Cristobal Uauy, Thomas Wicker, Michael Abrouk, Yong Q Gu … Vijay K Tiwari
Database, Volume 2023, 2023, baad079, https://doi.org/10.1093/database/baad079
Published: 16 November 2023
Journal Article

AI4FoodDB: a database for personalized e-Health nutrition and lifestyle through wearable devices and artificial intelligence

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Sergio Romero-Tapiador, Blanca Lacruz-Pleguezuelos, Ruben Tolosana, Gala Freixer, Roberto Daza, Cristina M Fernández-Díaz, Elena Aguilar-Aguilar, Jorge Fernández-Cabezas, Silvia Cruz-Gil, Susana Molina, Maria Carmen Crespo, Teresa Laguna, Laura Judith Marcos-Zambrano, Ruben Vera-Rodriguez, Julian Fierrez, Ana Ramírez de Molina, Javier Ortega-Garcia, Isabel Espinosa-Salinas, Aythami Morales, Enrique Carrillo de Santa Pau
Database, Volume 2023, 2023, baad049, https://doi.org/10.1093/database/baad049
Published: 18 July 2023
Journal Article

SmartWoodID—an image collection of large end-grain surfaces to support wood identification systems

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Ruben De Blaere, Kévin Lievens, Dieter Van Hassel, Victor Deklerck, Tom De Mil, Wannes Hubau, Joris Van Acker, Nils Bourland, Jan Verwaeren, Jan Van den Bulcke, Hans Beeckman
Database, Volume 2023, 2023, baad034, https://doi.org/10.1093/database/baad034
Published: 13 May 2023
Journal Article

Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition

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Davy Weissenbacher, Karen O’Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen Piccolo, Peijin Han … Graciela Gonzalez-Hernandez
Database, Volume 2023, 2023, baac108, https://doi.org/10.1093/database/baac108
Published: 03 February 2023
Journal Article

Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers

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Graciela Gonzalez-Hernandez, Martin Krallinger, Monica Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
Database, Volume 2022, 2022, baac071, https://doi.org/10.1093/database/baac071
Published: 02 September 2022
Journal Article

SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences

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R Jorquera, C González, P T L C Clausen, B Petersen, D S Holmes
Database, Volume 2021, 2021, baab002, https://doi.org/10.1093/database/baab002
Published: 28 January 2021
Journal Article

Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties

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Carlos-Francisco Méndez-Cruz, Antonio Blanchet, Alan Godínez, Ignacio Arroyo-Fernández, Socorro Gama-Castro, Sara Berenice Martínez-Luna, Cristian González-Colín, Julio Collado-Vides
Database, Volume 2020, 2020, baaa109, https://doi.org/10.1093/database/baaa109
Published: 11 December 2020
Journal Article

FOBI: an ontology to represent food intake data and associate it with metabolomic data

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Pol Castellano-Escuder, Raúl González-Domínguez, David S Wishart, Cristina Andrés-Lacueva, Alex Sánchez-Pla
Database, Volume 2020, 2020, baaa033, https://doi.org/10.1093/databa/baaa033
Published: 17 June 2020
Journal Article

A negative storage model for precise but compact storage of genetic variation data

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Guillermo Gonzalez-Calderon, Ruizheng Liu, Rodrigo Carvajal, Jamie K Teer
Database, Volume 2020, 2020, baz158, https://doi.org/10.1093/database/baz158
Published: 15 April 2020
Journal Article

RPGeNet v2.0: expanding the universe of retinal disease gene interactions network

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Rodrigo Arenas-Galnares, Sergio Castillo-Lara, Vasileios Toulis, Daniel Boloc, Roser Gonzàlez-Duarte, Gemma Marfany, Josep F Abril
Database, Volume 2019, 2019, baz120, https://doi.org/10.1093/database/baz120
Published: 11 November 2019
Journal Article

Improved ontology for eukaryotic single-exon coding sequences in biological databases

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Roddy Jorquera, Carolina González, Philip Clausen, Bent Petersen, David S Holmes
Database, Volume 2018, 2018, bay089, https://doi.org/10.1093/database/bay089
Published: 18 September 2018
Journal Article

PVCbase: an integrated web resource for the PVC bacterial proteomes

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Nicola Bordin, Juan Carlos González-Sánchez, Damien P Devos
Database, Volume 2018, 2018, bay042, https://doi.org/10.1093/database/bay042
Published: 24 April 2018
Journal Article

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research

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Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
Database, Volume 2017, 2017, bax093, https://doi.org/10.1093/database/bax093
Published: 28 December 2017
Journal Article

SinEx DB: a database for single exon coding sequences in mammalian genomes

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Roddy Jorquera, Rodrigo Ortiz, F. Ossandon, Juan Pablo Cárdenas, Rene Sepúlveda, Carolina González, David S. Holmes
Database, Volume 2016, 2016, baw095, https://doi.org/10.1093/database/baw095
Published: 07 June 2016
Journal Article

Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria

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Miguel A. Ibarra-Arellano, Adrián I. Campos-González, Luis G. Treviño-Quintanilla, Andreas Tauch, Julio A. Freyre-González
Database, Volume 2016, 2016, baw089, https://doi.org/10.1093/database/baw089
Published: 30 May 2016