Authors: Rezarta Islamaj Doğan
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Journal Article

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

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Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altınel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang … Zhiyong Lu
Database, Volume 2019, 2019, bay147, https://doi.org/10.1093/database/bay147
Published: 28 January 2019
Journal Article

The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

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Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, W. John Wilbur, Donald C. Comeau, Kara Dolinski, Mike Tyers
Database, Volume 2017, 2017, baw147, https://doi.org/10.1093/database/baw147
Published: 10 January 2017
Journal Article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article

Crowdsourcing and curation: perspectives from biology and natural language processing

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Lynette Hirschman, Karën Fort, Stéphanie Boué, Nikos Kyrpides, Rezarta Islamaj Doğan, Kevin Bretonnel Cohen
Database, Volume 2016, 2016, baw115, https://doi.org/10.1093/database/baw115
Published: 08 August 2016
Journal Article

BioC interoperability track overview

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Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Doğan, Antonio Jimeno Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2014, 2014, bau053, https://doi.org/10.1093/database/bau053
Published: 28 June 2014
Journal Article

BioC implementations in Go, Perl, Python and Ruby

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Wanli Liu, Rezarta Islamaj Doğan, Dongseop Kwon, Hernani Marques, Fabio Rinaldi, W. John Wilbur, Donald C. Comeau
Database, Volume 2014, 2014, bau059, https://doi.org/10.1093/database/bau059
Published: 23 June 2014
Journal Article

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

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Donald C. Comeau, Haibin Liu, Rezarta Islamaj Doğan, W. John Wilbur
Database, Volume 2014, 2014, bau056, https://doi.org/10.1093/database/bau056
Published: 15 June 2014
Journal Article

Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora

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Rezarta Islamaj Doğan, Donald C. Comeau, Lana Yeganova, W. John Wilbur
Database, Volume 2014, 2014, bau044, https://doi.org/10.1093/database/bau044
Published: 09 June 2014
Journal Article

BioC: a minimalist approach to interoperability for biomedical text processing

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Donald C. Comeau, Rezarta Islamaj Doğan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2013, 2013, bat064, https://doi.org/10.1093/database/bat064
Published: 18 September 2013
Journal Article

Understanding PubMed® user search behavior through log analysis

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Rezarta Islamaj Dogan, G. Craig Murray, Aurélie Névéol, Zhiyong Lu
Database, Volume 2009, 2009, bap018, https://doi.org/10.1093/database/bap018
Published: 27 November 2009