Authors: Ramanathan Sowdhamini
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Journal Article

PASS2: update of database of structure-based sequence alignments

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Revathy Menon, Soumya Nayak, Rama Rajesh, Ramanathan Sowdhamini
Database, Volume 2025, 2025, baaf072, https://doi.org/10.1093/database/baaf072
Published: 13 November 2025
Journal Article

GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database

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Sarthak Joshi, Shailendu Mohapatra, Dhwani Kumar, Adwait Joshi, Meenakshi Iyer, Ramanathan Sowdhamini
Database, Volume 2025, 2025, baaf035, https://doi.org/10.1093/database/baaf035
Published: 09 May 2025
Journal Article

PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe

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Teerna Bhattacharyya, Soumya Nayak, Smit Goswami, Vasundhara Gadiyaram, Oommen K Mathew, Ramanathan Sowdhamini
Database, Volume 2022, 2022, baac025, https://doi.org/10.1093/database/baac025
Published: 12 April 2022
Journal Article

DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins

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Neha V Kalmankar, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Database, Volume 2022, 2022, baac005, https://doi.org/10.1093/database/baac005
Published: 01 March 2022
Journal Article

GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies

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Meenakshi S Iyer, Kartik Bhargava, Murugavel Pavalam, Ramanathan Sowdhamini
Database, Volume 2019, 2019, baz042, https://doi.org/10.1093/database/baz042
Published: 03 April 2019
Journal Article

PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe

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Pritha Ghosh, Teerna Bhattacharyya, Oommen K Mathew, Ramanathan Sowdhamini
Database, Volume 2019, 2019, baz028, https://doi.org/10.1093/database/baz028
Published: 01 March 2019
Journal Article

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

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Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan … Gerrit Vriend
Database, Volume 2015, 2015, bav063, https://doi.org/10.1093/database/bav063
Published: 11 July 2015
Journal Article

SInCRe—structural interactome computational resource for Mycobacterium tuberculosis

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Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa-Montaño, Alicia P. Higueruelo, Ramanathan Sowdhamini, Nagasuma R. Chandra, Tom L. Blundell, Narayanaswamy Srinivasan
Database, Volume 2015, 2015, bav060, https://doi.org/10.1093/database/bav060
Published: 30 June 2015
Journal Article

3DSwap: curated knowledgebase of proteins involved in 3D domain swapping

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Khader Shameer, Prashant N. Shingate, S. C. P. Manjunath, M. Karthika, Ganesan Pugalenthi, Ramanathan Sowdhamini
Database, Volume 2011, 2011, bar042, https://doi.org/10.1093/database/bar042
Published: 29 September 2011