Authors: Raja Mazumder
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Journal Article

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy

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Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F Aoki-Kinoshita, Cecilia Arighi, Kristian B Axelsen, Evan Bolton, Emily Bordeleau, Nathan J Edwards, Elisa Fadda, Ten Feizi, Catherine Hayes, Callum M Ives, Hiren J Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frederique Lisacek, Yan Liu, Thomas Lütteke … Raja Mazumder
Database, Volume 2024, 2024, baae073, https://doi.org/10.1093/database/baae073
Published: 13 August 2024
Journal Article

Bioinformatics tools developed to support BioCompute Objects

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Janisha A Patel, Dennis A Dean, Charles Hadley King, Nan Xiao, Soner Koc, Ekaterina Minina, Anton Golikov, Phillip Brooks, Robel Kahsay, Rahi Navelkar, Manisha Ray, Dave Roberson, Chris Armstrong, Raja Mazumder, Jonathon Keeney
Database, Volume 2021, 2021, baab008, https://doi.org/10.1093/database/baab008
Published: 30 March 2021
Journal Article

DEXTER: Disease-Expression Relation Extraction from Text

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Samir Gupta, Hayley Dingerdissen, Karen E Ross, Yu Hu, Cathy H Wu, Raja Mazumder, K Vijay-Shanker
Database, Volume 2018, 2018, bay045, https://doi.org/10.1093/database/bay045
Published: 30 May 2018
Journal Article

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis

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Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William Faison, Scott Goldweber, Anton Golikov, Naila Gulzar, Konstantinos Karagiannis, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan, Alexey Pschenichnov, Alexandre Rostovtsev, Luis Santana-Quintero, Krista Smith, Elaine E. Thompson, Valery Tkachenko … Raja Mazumder
Database, Volume 2016, 2016, baw022, https://doi.org/10.1093/database/baw022
Published: 17 March 2016
Journal Article

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis

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Tsung-Jung Wu, Lynn M. Schriml, Qing-Rong Chen, Maureen Colbert, Daniel J. Crichton, Richard Finney, Ying Hu, Warren A. Kibbe, Heather Kincaid, Daoud Meerzaman, Elvira Mitraka, Yang Pan, Krista M. Smith, Sudhir Srivastava, Sari Ward, Cheng Yan, Raja Mazumder
Database, Volume 2015, 2015, bav032, https://doi.org/10.1093/database/bav032
Published: 04 April 2015
Journal Article

BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis

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Quan Wan, Hayley Dingerdissen, Yu Fan, Naila Gulzar, Yang Pan, Tsung-Jung Wu, Cheng Yan, Haichen Zhang, Raja Mazumder
Database, Volume 2015, 2015, bav019, https://doi.org/10.1093/database/bav019
Published: 28 March 2015
Journal Article

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)

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Tsung-Jung Wu, Amirhossein Shamsaddini, Yang Pan, Krista Smith, Daniel J. Crichton, Vahan Simonyan, Raja Mazumder
Database, Volume 2014, 2014, bau022, https://doi.org/10.1093/database/bau022
Published: 25 March 2014
Journal Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

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Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Michael J. Cherry, Peter D’Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O’Donovan, Francis Ouellette, Kim D. Pruitt … Raja Mazumder
Database, Volume 2012, 2012, bas036, https://doi.org/10.1093/database/bas036
Published: 29 October 2012
Journal Article

Biocuration Virtual Issue 2012

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Pascale Gaudet, Raja Mazumder
Database, Volume 2012, 2012, bas011, https://doi.org/10.1093/database/bas011
Published: 13 February 2012