Authors: Raúl+Arias-Carrasco
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Journal Article

Gene Loss DB: a curated database for gene loss in mammals—the cetacean collection

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Gonçalo Espregueira Themudo, Raquel Ruivo, Raul Valente, Nádia Artilheiro, Diogo Oliveira, Inês Amorim, Bernardo Pinto, Luís Filipe C Castro, Sergio Fernandes, Mónica Lopes-Marques
Database, Volume 2025, 2025, baaf065, https://doi.org/10.1093/database/baaf065
Published: 24 September 2025
Journal Article

Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition

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Davy Weissenbacher, Karen O’Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen Piccolo, Peijin Han … Graciela Gonzalez-Hernandez
Database, Volume 2023, 2023, baac108, https://doi.org/10.1093/database/baac108
Published: 03 February 2023
Journal Article

Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers

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Graciela Gonzalez-Hernandez, Martin Krallinger, Monica Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
Database, Volume 2022, 2022, baac071, https://doi.org/10.1093/database/baac071
Published: 02 September 2022
Journal Article

New reasons for biologists to write with a formal language

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Raul Rodriguez-Esteban
Database, Volume 2022, 2022, baac039, https://doi.org/10.1093/database/baac039
Published: 03 June 2022
Journal Article

CorkOakDB—The Cork Oak Genome Database Portal

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Cirenia Arias-Baldrich, Marta Contreiras Silva, Filippo Bergeretti, Inês Chaves, Célia Miguel, Nelson J M Saibo, Daniel Sobral, Daniel Faria, Pedro M Barros
Database, Volume 2020, 2020, baaa114, https://doi.org/10.1093/database/baaa114
Published: 31 December 2020
Journal Article

FOBI: an ontology to represent food intake data and associate it with metabolomic data

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Pol Castellano-Escuder, Raúl González-Domínguez, David S Wishart, Cristina Andrés-Lacueva, Alex Sánchez-Pla
Database, Volume 2020, 2020, baaa033, https://doi.org/10.1093/databa/baaa033
Published: 17 June 2020
Journal Article

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

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Jasmine Y Young, John D Westbrook, Zukang Feng, Ezra Peisach, Irina Persikova, Raul Sala, Sanchayita Sen, John M Berrisford, G Jawahar Swaminathan, Thomas J Oldfield, Aleksandras Gutmanas, Reiko Igarashi, David R Armstrong, Kumaran Baskaran, Li Chen, Minyu Chen, Alice R Clark, Luigi Di Costanzo, Dimitris Dimitropoulos … Stephen K Burley
Database, Volume 2018, 2018, bay002, https://doi.org/10.1093/database/bay002
Published: 07 February 2018
Journal Article

Text mining and expert curation to develop a database on psychiatric diseases and their genes

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Alba Gutiérrez-Sacristán, Àlex Bravo, Marta Portero-Tresserra, Olga Valverde, Antonio Armario, M.C. Blanco-Gandía, Adriana Farré, Lierni Fernández-Ibarrondo, Francina Fonseca, Jesús Giraldo, Angela Leis, Anna Mané, M.A. Mayer, Sandra Montagud-Romero, Roser Nadal, Jordi Ortiz, Francisco Javier Pavon, Ezequiel Jesús Perez, Marta Rodríguez-Arias … Laura I. Furlong
Database, Volume 2017, 2017, bax043, https://doi.org/10.1093/database/bax043
Published: 26 June 2017
Journal Article

LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis

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Felipe Torres, Raúl Arias-Carrasco, José C. Caris-Maldonado, Aldina Barral, Vinicius Maracaja-Coutinho, Artur T. L. De Queiroz
Database, Volume 2017, 2017, bax047, https://doi.org/10.1093/database/bax047
Published: 13 June 2017
Journal Article

Overview of the interactive task in BioCreative V

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Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios Gkoutos, Afroza K. Irin, Lars J. Jensen … Cecilia N. Arighi
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Published: 01 September 2016
Journal Article

Biocuration with insufficient resources and fixed timelines

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Raul Rodriguez-Esteban
Database, Volume 2015, 2015, bav116, https://doi.org/10.1093/database/bav116
Published: 23 December 2015
Journal Article

Chemical annotation of small and peptide-like molecules at the Protein Data Bank

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Jasmine Y. Young, Zukang Feng, Dimitris Dimitropoulos, Raul Sala, John Westbrook, Marina Zhuravleva, Chenghua Shao, Martha Quesada, Ezra Peisach, Helen M. Berman
Database, Volume 2013, 2013, bat079, https://doi.org/10.1093/database/bat079
Published: 28 November 2013