Authors: Patrick Ruch
Save search
Select how you would like to sort the search results
Journal Article

Assessing the use of supplementary materials to improve genomic variant discovery

PDF
Emilie Pasche, Anaïs Mottaz, Julien Gobeill, Pierre-André Michel, Déborah Caucheteur, Nona Naderi, Patrick Ruch
Database, Volume 2023, 2023, baad017, https://doi.org/10.1093/database/baad017
Published: 31 March 2023
Journal Article

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

PDF
Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N Arighi, Patrick Ruch
Database, Volume 2020, 2020, baaa026, https://doi.org/10.1093/database/baaa026
Published: 04 May 2020
Journal Article

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

PDF
Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Daniel Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
Database, Volume 2018, 2018, bay129, https://doi.org/10.1093/database/bay129
Published: 14 December 2018
Journal Article

Overview of the BioCreative VI text-mining services for Kinome Curation Track

PDF
Julien Gobeill, Pascale Gaudet, Daniel Dopp, Adam Morrone, Indika Kahanda, Yi-Yu Hsu, Chih-Hsuan Wei, Zhiyong Lu, Patrick Ruch
Database, Volume 2018, 2018, bay104, https://doi.org/10.1093/database/bay104
Published: 17 October 2018
Journal Article

Improving average ranking precision in user searches for biomedical research datasets

PDF
Douglas Teodoro, Luc Mottin, Julien Gobeill, Arnaud Gaudinat, Thérèse Vachon, Patrick Ruch
Database, Volume 2017, 2017, bax083, https://doi.org/10.1093/database/bax083
Published: 06 November 2017
Journal Article

Triage by ranking to support the curation of protein interactions

PDF
Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch
Database, Volume 2017, 2017, bax040, https://doi.org/10.1093/database/bax040
Published: 11 June 2017
Journal Article

neXtA 5 : accelerating annotation of articles via automated approaches in neXtProt

PDF
Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
Database, Volume 2016, 2016, baw098, https://doi.org/10.1093/database/baw098
Published: 02 July 2016
Journal Article

Deep Question Answering for protein annotation

PDF
Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch
Database, Volume 2015, 2015, bav081, https://doi.org/10.1093/database/bav081
Published: 16 September 2015
Journal Article

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

PDF
Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Database, Volume 2014, 2014, bau088, https://doi.org/10.1093/database/bau088
Published: 04 September 2014
Journal Article

Overview of the gene ontology task at BioCreative IV

PDF
Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu … Zhiyong Lu
Database, Volume 2014, 2014, bau086, https://doi.org/10.1093/database/bau086
Published: 25 August 2014
Journal Article

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases

PDF
Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Database, Volume 2013, 2013, bat041, https://doi.org/10.1093/database/bat041
Published: 09 July 2013
Journal Article

Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database

PDF
Dina Vishnyakova, Emilie Pasche, Patrick Ruch
Database, Volume 2012, 2012, bas050, https://doi.org/10.1093/database/bas050
Published: 05 December 2012