Authors: Pascale Gaudet
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Journal Article

Annotation of gene product function from high-throughput studies using the Gene Ontology

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Helen Attrill, Pascale Gaudet, Rachael P Huntley, Ruth C Lovering, Stacia R Engel, Sylvain Poux, Kimberly M Van Auken, George Georghiou, Marcus C Chibucos, Tanya Z Berardini, Valerie Wood, Harold Drabkin, Petra Fey, Penelope Garmiri, Midori A Harris, Tony Sawford, Leonore Reiser, Rebecca Tauber, Sabrina Toro, The Gene Ontology Consortium
Database, Volume 2019, 2019, baz007, https://doi.org/10.1093/database/baz007
Published: 01 February 2019
Journal Article

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

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Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Daniel Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
Database, Volume 2018, 2018, bay129, https://doi.org/10.1093/database/bay129
Published: 14 December 2018
Journal Article

Overview of the BioCreative VI text-mining services for Kinome Curation Track

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Julien Gobeill, Pascale Gaudet, Daniel Dopp, Adam Morrone, Indika Kahanda, Yi-Yu Hsu, Chih-Hsuan Wei, Zhiyong Lu, Patrick Ruch
Database, Volume 2018, 2018, bay104, https://doi.org/10.1093/database/bay104
Published: 17 October 2018
Journal Article

Triage by ranking to support the curation of protein interactions

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Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch
Database, Volume 2017, 2017, bax040, https://doi.org/10.1093/database/bax040
Published: 11 June 2017
Journal Article

Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes

Marc Feuermann, Pascale Gaudet, Huaiyu Mi, Suzanna E. Lewis, Paul D. Thomas
Database, Volume 2016, 2016, baw155, https://doi.org/10.1093/database/baw155
Published: 26 December 2016
Journal Article

neXtA 5 : accelerating annotation of articles via automated approaches in neXtProt

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Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
Database, Volume 2016, 2016, baw098, https://doi.org/10.1093/database/baw098
Published: 02 July 2016
Journal Article

Deep Question Answering for protein annotation

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Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch
Database, Volume 2015, 2015, bav081, https://doi.org/10.1093/database/bav081
Published: 16 September 2015
Journal Article

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

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Frederic B. Bastian, Marcus C. Chibucos, Pascale Gaudet, Michelle Giglio, Gemma L. Holliday, Hong Huang, Suzanna E. Lewis, Anne Niknejad, Sandra Orchard, Sylvain Poux, Nives Skunca, Marc Robinson-Rechavi
Database, Volume 2015, 2015, bav043, https://doi.org/10.1093/database/bav043
Published: 09 May 2015
Journal Article

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration

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Pascale Gaudet, Monica Munoz-Torres, Marc Robinson-Rechavi, Teresa Attwood, Alex Bateman, J. Michael Cherry, Renate Kania, Claire O'Donovan, Chisato Yamasaki
Database, Volume 2013, 2013, bat077, https://doi.org/10.1093/database/bat077
Published: 06 December 2013
Journal Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

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Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Michael J. Cherry, Peter D’Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O’Donovan, Francis Ouellette, Kim D. Pruitt … Raja Mazumder
Database, Volume 2012, 2012, bas036, https://doi.org/10.1093/database/bas036
Published: 29 October 2012
Journal Article

Biocurators and Biocuration: surveying the 21st century challenges

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Sarah Burge, Teresa K. Attwood, Alex Bateman, Tanya Z. Berardini, Michael Cherry, Claire O'Donovan, loannis Xenarios, Pascale Gaudet
Database, Volume 2012, 2012, bar059, https://doi.org/10.1093/database/bar059
Published: 13 February 2012
Journal Article

Biocuration Virtual Issue 2012

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Pascale Gaudet, Raja Mazumder
Database, Volume 2012, 2012, bas011, https://doi.org/10.1093/database/bas011
Published: 13 February 2012
Journal Article

Towards BioDBcore: a community-defined information specification for biological databases

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Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock … on behalf of the BioDBCore working group
Database, Volume 2011, 2011, baq027, https://doi.org/10.1093/database/baq027
Published: 04 January 2011