Authors: Ming Chen
Save search
Select how you would like to sort the search results
Journal Article

InTxDB: interaction data between gram-negative bacteria secreted effectors and host proteins

PDF
Yanyan Zhu, Liya Liu, Yueming Hu, Sida Li, Enyan Liu, Yanshi Hu, Shilong Zhang, Haoyu Chao, Qiuyu Fang, Huan Yu, Ming Chen
Database, Volume 2025, 2025, baaf070, https://doi.org/10.1093/database/baaf070
Published: 31 October 2025
Journal Article

STCDB4ND: a signal transduction classification database for neurological diseases

PDF
Boyan Gong, Sida Li, Yifan Chen, Liya Liu, Ralf Hofestädt, Ming Chen
Database, Volume 2025, 2025, baaf032, https://doi.org/10.1093/database/baaf032
Published: 02 May 2025
Journal Article

AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling

PDF
Yi Shen, Liya Liu, Enyan Liu, Sida Li, Yuriy Orlov, Vladimir Ivanisenko, Ming Chen
Database, Volume 2024, 2024, baae123, https://doi.org/10.1093/database/baae123
Published: 17 December 2024
Journal Article

CropGF: a comprehensive visual platform for crop gene family mining and analysis

PDF
Jingtian Xu, Can Zhu, Minzeng Su, Sida Li, Haoyu Chao, Ming Chen
Database, Volume 2023, 2023, baad051, https://doi.org/10.1093/database/baad051
Published: 01 July 2023
Journal Article

LBD: a manually curated database of experimentally validated lymphoma biomarkers

PDF
Bin Tan, Saige Xin, Yanshi Hu, Cong Feng, Ming Chen
Database, Volume 2022, 2022, baac051, https://doi.org/10.1093/database/baac051
Published: 29 June 2022
Journal Article

lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data

PDF
Yi-Wei Lee, Ming Chen, I-Fang Chung, Ting-Yu Chang
Database, Volume 2021, 2021, baab053, https://doi.org/10.1093/database/baab053
Published: 31 August 2021
Journal Article

mPPI: a database extension to visualize structural interactome in a one-to-many manner

PDF
Yekai Zhou, Hongjun Chen, Sida Li, Ming Chen
Database, Volume 2021, 2021, baab036, https://doi.org/10.1093/database/baab036
Published: 22 June 2021
Journal Article

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases

PDF
Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill Wegrzyn, Dorrie Main, F Alex Feltus, Stephen P Ficklin
Database, Volume 2020, 2020, baaa032, https://doi.org/10.1093/database/baaa032
Published: 04 July 2020
Journal Article

PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants

PDF
Wenyi Wu, Yan Wu, Dahui Hu, Yincong Zhou, Yanshi Hu, Yujie Chen, Ming Chen
Database, Volume 2020, 2020, baaa001, https://doi.org/10.1093/database/baaa001
Published: 17 March 2020
Journal Article

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases

PDF
Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin Bett, Margaret Staton, Jill L Wegrzyn, F Alex Feltus, Stephen P Ficklin
Database, Volume 2019, 2019, baz077, https://doi.org/10.1093/database/baz077
Published: 22 July 2019
Journal Article

SeQuery: an interactive graph database for visualizing the GPCR superfamily

PDF
Geng-Ming Hu, M K Secario, Chi-Ming Chen
Database, Volume 2019, 2019, baz073, https://doi.org/10.1093/database/baz073
Published: 25 June 2019
Journal Article

CircFunBase: a database for functional circular RNAs

PDF
Xianwen Meng, Dahui Hu, Peijing Zhang, Qi Chen, Ming Chen
Database, Volume 2019, 2019, baz003, https://doi.org/10.1093/database/baz003
Published: 04 February 2019
Journal Article

Tripal Developer Toolkit

PDF
Bradford Condon, Abdullah Almsaeed, Ming Chen, Joe West, Margaret Staton
Database, Volume 2018, 2018, bay099, https://doi.org/10.1093/database/bay099
Published: 20 September 2018
Journal Article

PlantCircNet: a database for plant circRNA–miRNA–mRNA regulatory networks

PDF
Peijing Zhang, Xianwen Meng, Hongjun Chen, Yongjing Liu, Jitong Xue, Yincong Zhou, Ming Chen
Database, Volume 2017, 2017, bax089, https://doi.org/10.1093/database/bax089
Published: 09 December 2017
Journal Article

New extension software modules to enhance searching and display of transcriptome data in Tripal databases

PDF
Ming Chen, Nathan Henry, Abdullah Almsaeed, Xiao Zhou, Jill Wegrzyn, Stephen Ficklin, Margaret Staton
Database, Volume 2017, 2017, bax052, https://doi.org/10.1093/database/bax052
Published: 27 July 2017
Journal Article

Overview of the gene ontology task at BioCreative IV

PDF
Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu … Zhiyong Lu
Database, Volume 2014, 2014, bau086, https://doi.org/10.1093/database/bau086
Published: 25 August 2014