Authors: Martin Hofmann-Apitius
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Journal Article

Dataset of miRNA–disease relations extracted from textual data using transformer-based neural networks

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Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
Database, Volume 2024, 2024, baae066, https://doi.org/10.1093/database/baae066
Published: 05 August 2024
Journal Article

Design of the formalized and integrated Alzheimer’s Disease Ontology and its application in retrieving textual data via text mining

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Bide Zhang, Vanessa Lage-Rupprecht, Philipp Wegner, Astghik Sargsyan, Stephan Gebel, Marc Jacobs, Jürgen Klein, Martin Hofmann-Apitius, Alpha Tom Kodamullil
Database, Volume 2023, 2023, baad085, https://doi.org/10.1093/database/baad085
Published: 02 December 2023
Journal Article

Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer’s disease

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Vincent Henry, Ivan Moszer, Olivier Dameron, Laura Vila Xicota, Bruno Dubois, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot, INSIGHT-preAD Study Group
Database, Volume 2021, 2021, baab004, https://doi.org/10.1093/database/baab004
Published: 16 February 2021
Journal Article

PTSD Biomarker Database: deep dive metadatabase for PTSD biomarkers, visualizations and analysis tools

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Daniel Domingo-Fernández, Allison Provost, Alpha Tom Kodamullil, Josep Marín-Llaó, Heather Lasseter, Kristophe Diaz, Nikolaos P Daskalakis, Lee Lancashire, Martin Hofmann-Apitius, Magali Haas
Database, Volume 2019, 2019, baz081, https://doi.org/10.1093/database/baz081
Published: 29 June 2019
Journal Article

Re-curation and rational enrichment of knowledge graphs in Biological Expression Language

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Charles Tapley Hoyt, Daniel Domingo-Fernández, Rana Aldisi, Lingling Xu, Kristian Kolpeja, Sandra Spalek, Esther Wollert, John Bachman, Benjamin M Gyori, Patrick Greene, Martin Hofmann-Apitius
Database, Volume 2019, 2019, baz068, https://doi.org/10.1093/database/baz068
Published: 21 June 2019
Journal Article

BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language

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Charles Tapley Hoyt, Daniel Domingo-Fernández, Martin Hofmann-Apitius
Database, Volume 2018, 2018, bay126, https://doi.org/10.1093/database/bay126
Published: 14 December 2018
Journal Article

A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities

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Charles Tapley Hoyt, Daniel Domingo-Fernández, Nora Balzer, Anka Güldenpfennig, Martin Hofmann-Apitius
Database, Volume 2018, 2018, bay050, https://doi.org/10.1093/database/bay050
Published: 03 June 2018
Journal Article

NeuroTransDB : highly curated and structured transcriptomic metadata for neurodegenerative diseases

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Shweta Bagewadi, Subash Adhikari, Anjani Dhrangadhariya, Afroza Khanam Irin, Christian Ebeling, Aishwarya Alex Namasivayam, Matthew Page, Martin Hofmann-Apitius, Philipp Senger
Database, Volume 2015, 2015, bav099, https://doi.org/10.1093/database/bav099
Published: 15 October 2015
Journal Article

Construction of biological networks from unstructured information based on a semi-automated curation workflow

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Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
Database, Volume 2015, 2015, bav057, https://doi.org/10.1093/database/bav057
Published: 16 June 2015