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Authors: Luis+Marenco
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Journal Article
ENcyclopedia of TRAnscription Factors in Bacteria and Archaea genomes (ENTRAF) version 2.0
PDF
Silvia Tenorio-Salgado, Cinthia Rodríguez Maya, Edgardo Galan-Vasquez, André Borges Farias, Dulce Álvarez-López, Jose Luis Villalpando-Aguilar, Alberto J Martin, Leonardo Ledesma-Dominguez, Ernesto Perez-Rueda
Database, Volume 2025, 2025, baaf071, https://doi.org/10.1093/database/baaf071
Published: 29 October 2025
Journal Article
Gene Loss DB: a curated database for gene loss in mammals—the cetacean collection
PDF
Gonçalo Espregueira Themudo, Raquel Ruivo, Raul Valente, Nádia Artilheiro, Diogo Oliveira, Inês Amorim, Bernardo Pinto, Luís Filipe C Castro, Sergio Fernandes, Mónica Lopes-Marques
Database, Volume 2025, 2025, baaf065, https://doi.org/10.1093/database/baaf065
Published: 24 September 2025
Journal Article
Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations
PDF
Antonio Miranda-Escalada, Farrokh Mehryary, Jouni Luoma, Darryl Estrada-Zavala, Luis Gasco, Sampo Pyysalo, Alfonso Valencia, Martin Krallinger
Database, Volume 2023, 2023, baad080, https://doi.org/10.1093/database/baad080
Published: 28 November 2023
Journal Article
Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition
PDF
Davy Weissenbacher, Karen O’Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen Piccolo, Peijin Han … Graciela Gonzalez-Hernandez
Database, Volume 2023, 2023, baac108, https://doi.org/10.1093/database/baac108
Published: 03 February 2023
Journal Article
Translational drug–interaction corpus
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Shijun Zhang, Hengyi Wu, Lei Wang, Gongbo Zhang, Luis M Rocha, Hagit Shatkay, Lang Li
Database, Volume 2022, 2022, baac031, https://doi.org/10.1093/database/baac031
Published: 25 May 2022
Journal Article
The World Spider Trait database: a centralized global open repository for curated data on spider traits
PDF
Stano Pekár, Jonas O Wolff, Ľudmila Černecká, Klaus Birkhofer, Stefano Mammola, Elizabeth C Lowe, Caroline S Fukushima, Marie E Herberstein, Adam Kučera, Bruno A Buzatto, El Aziz Djoudi, Marc Domenech, Alison Vanesa Enciso, Yolanda M G Piñanez Espejo, Sara Febles, Luis F García, Thiago Gonçalves-Souza, Marco Isaia, Denis Lafage … Pedro Cardoso
Database, Volume 2021, 2021, baab064, https://doi.org/10.1093/database/baab064
Published: 20 October 2021
Journal Article
A semantic-based workflow for biomedical literature annotation
PDF
Pedro Sernadela, José Luís Oliveira
Database, Volume 2017, 2017, bax088, https://doi.org/10.1093/database/bax088
Published: 15 November 2017
Journal Article
First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes
PDF
Carlos-Francisco Méndez-Cruz, Socorro Gama-Castro, Citlalli Mejía-Almonte, Marco-Polo Castillo-Villalba, Luis-José Muñiz-Rascado, Julio Collado-Vides
Database, Volume 2017, 2017, bax070, https://doi.org/10.1093/database/bax070
Published: 26 September 2017
Journal Article
Impact of translation on named-entity recognition in radiology texts
PDF
Luís Campos, Vasco Pedro, Francisco Couto
Database, Volume 2017, 2017, bax064, https://doi.org/10.1093/database/bax064
Published: 28 August 2017
Journal Article
Strategies towards digital and semi-automated curation in RegulonDB
PDF
Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes, Luis José Muñiz Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
Database, Volume 2017, 2017, bax012, https://doi.org/10.1093/database/bax029
Published: 17 April 2017
Journal Article
Strategies towards digital and semi-automated curation in RegulonDB
PDF
Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes, Luis José Muñiz Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
Database, Volume 2017, 2017, bax012, https://doi.org/10.1093/database/bax012
Published: 18 March 2017
Journal Article
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions
PDF
Luis Marenco, Rixin Wang, Robert McDougal, Tsviya Olender, Michal Twik, Elspeth Bruford, Xinyi Liu, Jian Zhang, Doron Lancet, Gordon Shepherd, Chiquito Crasto
Database, Volume 2016, 2016, baw132, https://doi.org/10.1093/database/baw132
Published: 01 October 2016
Journal Article
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID
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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article
Mining clinical attributes of genomic variants through assisted literature curation in Egas
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Sérgio Matos, David Campos, Renato Pinho, Raquel M. Silva, Matthew Mort, David N. Cooper, José Luís Oliveira
Database, Volume 2016, 2016, baw096, https://doi.org/10.1093/database/baw096
Published: 07 June 2016
Journal Article
Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria
PDF
Miguel A. Ibarra-Arellano, Adrián I. Campos-González, Luis G. Treviño-Quintanilla, Andreas Tauch, Julio A. Freyre-González
Database, Volume 2016, 2016, baw089, https://doi.org/10.1093/database/baw089
Published: 30 May 2016
Journal Article
HNdb: an integrated database of gene and protein information on head and neck squamous cell carcinoma
PDF
Tiago Henrique, Nelson José Freitas da Silveira, Arthur Henrique Cunha Volpato, Mayra Mataruco Mioto, Ana Carolina Buzzo Stefanini, Adil Bachir Fares, João Gustavo da Silva Castro Andrade, Carolina Masson, Rossana Verónica Mendoza López, Fabio Daumas Nunes, Luis Paulo Kowalski, Patricia Severino, Eloiza Helena Tajara
Database, Volume 2016, 2016, baw026, https://doi.org/10.1093/database/baw026
Published: 24 March 2016
Journal Article
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis
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Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William Faison, Scott Goldweber, Anton Golikov, Naila Gulzar, Konstantinos Karagiannis, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan, Alexey Pschenichnov, Alexandre Rostovtsev, Luis Santana-Quintero, Krista Smith, Elaine E. Thompson, Valery Tkachenko … Raja Mazumder
Database, Volume 2016, 2016, baw022, https://doi.org/10.1093/database/baw022
Published: 17 March 2016
Journal Article
Egas: a collaborative and interactive document curation platform
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David Campos, Jóni Lourenço, Sérgio Matos, José Luís Oliveira
Database, Volume 2014, 2014, bau048, https://doi.org/10.1093/database/bau048
Published: 11 June 2014
Journal Article
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework
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A. E. Bandrowski, J. Cachat, Y. Li, H. M. Müller, P. W. Sternberg, P. Ciccarese, T. Clark, L. Marenco, R. Wang, V. Astakhov, J. S. Grethe, M. E. Martone
Database, Volume 2012, 2012, bas005, https://doi.org/10.1093/database/bas005
Published: 13 February 2012
Journal Article
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss
PDF
Alex Di Génova, Andrés Aravena, Luis Zapata, Mauricio González, Alejandro Maass, Patricia Iturra
Database, Volume 2011, 2011, bar050, https://doi.org/10.1093/database/bar050
Published: 25 November 2011