Authors: Li+Fang
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Journal Article

IFNIKB: a type I interferon database for antitumuor immunity studies

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Fubo Ma, Kang Li, Yangchao Yu, Lei Zhang, Liguo Zhang, Bing Li, Le Zhang
Database, Volume 2026, 2026, baag053, https://doi.org/10.1093/database/baag053
Published: 07 September 2026
Journal Article

GIDISdb: a gene expression database for exploring human immune responses in infectious diseases

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Yu Liao, Zhen-Lin Tan, Wen-Kang Shen, Wei Li, Qian Lei, An-Yuan Guo
Database, Volume 2026, 2026, baag036, https://doi.org/10.1093/database/baag036
Published: 09 July 2026
Journal Article

KitBase Expanded: An Integrated Genomic and Phenotypic Resource for 3,268 Fast-Neutron-Irradiated Rice Mutants

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Artur Teixeira de Araujo, Jr, Rashmi Jain, Deling Ruan, Mawsheng Chern, Nguyen Ho, Rohan Bhushan Jhingan, Guotian Li, Phat Q Duong, Maria Florencia Ercoli, Pamela C Ronald
Database, Volume 2026, 2026, baag024, https://doi.org/10.1093/database/baag024
Published: 12 June 2026
Journal Article

TCMToxDB: a comprehensive database for the toxicological analysis of traditional Chinese medicines

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Yongzheng Zhu, Laihao Fang, Yunbo Miao, Longfei Ma, Rong Sun, Yimin Mao, Wei Guo, Jun Wang, Guoxian Yu
Database, Volume 2026, 2026, baag019, https://doi.org/10.1093/database/baag019
Published: 16 April 2026
Journal Article

neomerDB: a comprehensive database of neomer biomarkers in cancer

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Kimonas Provatas, Candace S Y Chan, Ioannis Kerasiotis, Eleftherios Bochalis, Akshatha Nayak, Brad E Zacharia, Georgios A Pavlopoulos, Wei Li, Ilias Georgakopoulos-Soares
Database, Volume 2026, 2026, baag006, https://doi.org/10.1093/database/baag006
Published: 12 February 2026
Journal Article

SynVectorDB: embedding-based retrieval system for synthetic biology parts

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Hao Li, Jiani Hu, Jie Song, Wei Zhou
Database, Volume 2026, 2026, baaf088, https://doi.org/10.1093/database/baaf088
Published: 15 January 2026
Journal Article

The Odonata of China: a data-driven, open-access resource for biodiversity research and conservation

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Shao-Yan Pu, Jing-Sheng Lu, Xin-Ling Tao, Zi-Feng Li, Ya-Nan Wang, Hao-Miao Zhang, Xuemei Lu
Database, Volume 2025, 2025, baaf077, https://doi.org/10.1093/database/baaf077
Published: 23 December 2025
Journal Article

HCoVDB: a comprehensive database encompassing viral genomes, drug targets, and therapeutics of human coronaviruses

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Pan Zhang, Tianxiang Ouyang, Xiaowen Hu, Jie Huang, Biao Xiao, Zhijian Huang, Xingyang Shi, Xinyi Wu, Linying Chen, Yongkang Wu, Hanyue Wang, Ying Zhang, Guangdi Li, Hui Liu, Lei Deng
Database, Volume 2025, 2025, baaf079, https://doi.org/10.1093/database/baaf079
Published: 26 November 2025
Journal Article

InTxDB: interaction data between gram-negative bacteria secreted effectors and host proteins

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Yanyan Zhu, Liya Liu, Yueming Hu, Sida Li, Enyan Liu, Yanshi Hu, Shilong Zhang, Haoyu Chao, Qiuyu Fang, Huan Yu, Ming Chen
Database, Volume 2025, 2025, baaf070, https://doi.org/10.1093/database/baaf070
Published: 31 October 2025
Journal Article

Zoonosis: a comprehensive database of zoonotic pathogens

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Boyuan Zhang, Dan Liu, Weiwen Wang, Xiaoqiang Li, Yifei Xie, Huitong Li, Hongmei Zhou, Jianshuai Gao, Hui Jiang, Xuezheng Fan, Jiabo Ding, Qingchun Shen, Xizheng Ma
Database, Volume 2025, 2025, baaf062, https://doi.org/10.1093/database/baaf062
Published: 15 October 2025
Journal Article

MRdb: a comprehensive database of univariate and multivariate Mendelian randomization with large-scale GWAS summary data

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Qian Liu, Yujie Zhang, Houxing Li, Jiatong Li, Mengyu Xin, Rui Sun, Yifan Dai, Xinxin Shan, Yuting He, Borui Xu, Shangwei Ning, Peng Wang, Qiuyan Guo
Database, Volume 2025, 2025, baaf054, https://doi.org/10.1093/database/baaf054
Published: 24 September 2025
Journal Article

DrugCombo: an informatics bridge for anticancer drug combination Phase I trial design

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Lei Wang, Shijun Zhang, Lai Wei, Yuxi Zhu, Naleef Fareed, Lijun Cheng, Williams Carson, Dwight Owen, Yong Zang, Suyu Liu, Aditi Shendre, Xiaofu Liu, Lang Li
Database, Volume 2025, 2025, baaf043, https://doi.org/10.1093/database/baaf043
Published: 24 September 2025
Journal Article

Biomedical literature-based clinical phenotype definition discovery using large language models

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Samar Binkheder, Xiaofu Liu, Michael Wu, Lei Wang, Aditi Shendre, Sara K Quinney, Wei-Qi Wei, Lang Li
Database, Volume 2025, 2025, baaf047, https://doi.org/10.1093/database/baaf047
Published: 24 September 2025
Journal Article

CAS: enhancing implicit constrained data augmentation with semantic enrichment for biomedical relation extraction and beyond

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Fang-Yi Su, Gia-Han Ngo, Ben Phan, Jung-Hsien Chiang
Database, Volume 2025, 2025, baaf025, https://doi.org/10.1093/database/baaf025
Published: 03 July 2025
Journal Article

STCDB4ND: a signal transduction classification database for neurological diseases

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Boyan Gong, Sida Li, Yifan Chen, Liya Liu, Ralf Hofestädt, Ming Chen
Database, Volume 2025, 2025, baaf032, https://doi.org/10.1093/database/baaf032
Published: 02 May 2025
Journal Article

MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database

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Jiaojiao Zhao, Min Wu, Meihua Wan, Xue Li, Jie Li, Qin Liu, Minghao Xiong, Mengjie Tu, Jun Zhou, Shilin Li, Jie Zhang, Jiangping Fu, Yin Zhang, Chungang Zhao, Litong Qin, Xue Yang, Hong Zhao, Yan Zhang, Fanxin Zeng
Database, Volume 2025, 2025, baaf029, https://doi.org/10.1093/database/baaf029
Published: 21 April 2025
Journal Article

mirTarCLASH: a comprehensive miRNA target database based on chimeric read-based experiments

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Tzu-Hsien Yang, Xiang-Wei Li, Yuan-Han Lee, Shang-Yi Lu, Wei-Sheng Wu, Heng-Chi Lee
Database, Volume 2025, 2025, baaf023, https://doi.org/10.1093/database/baaf023
Published: 05 April 2025
Journal Article

PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress

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Pingping Huang, Weilin Cao, Zhaojun Li, Qingshuai Chen, Guangchao Wang, Bailing Zhou, Jihua Wang
Database, Volume 2025, 2025, baaf015, https://doi.org/10.1093/database/baaf015
Published: 22 February 2025
Journal Article

HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production

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Alexander B Rogers, Varsha Kale, Germana Baldi, Antton Alberdi, M Thomas P Gilbert, Dipayan Gupta, Morten T Limborg, Sen Li, Thomas Payne, Bent Petersen, Jacob A Rasmussen, Lorna Richardson, Robert D Finn
Database, Volume 2025, 2025, baae112, https://doi.org/10.1093/database/baae112
Published: 11 January 2025
Journal Article

JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps

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Jiru Li, Dinghao Pan, Zhihao Yang, Yuanyuan Sun, Hongfei Lin, Jian Wang
Database, Volume 2024, 2024, baae125, https://doi.org/10.1093/database/baae125
Published: 19 December 2024