Authors: Kimberly Van Auken
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Journal Article

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase

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Valerio Arnaboldi, Daniela Raciti, Kimberly Van Auken, Juancarlos N Chan, Hans-Michael Müller, Paul W Sternberg
Database, Volume 2020, 2020, baaa006, https://doi.org/10.1093/database/baaa006
Published: 17 March 2020
Journal Article

Overview of the interactive task in BioCreative V

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Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios Gkoutos, Afroza K. Irin, Lars J. Jensen … Cecilia N. Arighi
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Published: 01 September 2016
Journal Article

Overview of the gene ontology task at BioCreative IV

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Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu … Zhiyong Lu
Database, Volume 2014, 2014, bau086, https://doi.org/10.1093/database/bau086
Published: 25 August 2014
Journal Article

BC4GO: a full-text corpus for the BioCreative IV GO task

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Kimberly Van Auken, Mary L. Schaeffer, Peter McQuilton, Stanley J. F. Laulederkind, Donghui Li, Shur-Jen Wang, G. Thomas Hayman, Susan Tweedie, Cecilia N. Arighi, James Done, Hans-Michael Müller, Paul W. Sternberg, Yuqing Mao, Chih-Hsuan Wei, Zhiyong Lu
Database, Volume 2014, 2014, bau074, https://doi.org/10.1093/database/bau074
Published: 28 July 2014
Journal Article

A guide to best practices for Gene Ontology (GO) manual annotation

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Rama Balakrishnan, Midori A. Harris, Rachael Huntley, Kimberly Van Auken, J. Michael Cherry
Database, Volume 2013, 2013, bat054, https://doi.org/10.1093/database/bat054
Published: 09 July 2013
Journal Article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

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Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila Dahdul, Paula Mabee, Donghui Li, Bethany Harris, Marc Gillespie, Silvia Jimenez, Phoebe Roberts, Lisa Matthews, Kevin Becker, Harold Drabkin … Cathy Wu
Database, Volume 2013, 2013, bas056, https://doi.org/10.1093/database/bas056
Published: 16 January 2013
Journal Article

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR

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Kimberly Van Auken, Petra Fey, Tanya Z. Berardini, Robert Dodson, Laurel Cooper, Donghui Li, Juancarlos Chan, Yuling Li, Siddhartha Basu, Hans-Michael Muller, Rex Chisholm, Eva Huala, Paul W. Sternberg, the WormBase Consortium
Database, Volume 2012, 2012, bas040, https://doi.org/10.1093/database/bas040
Published: 15 November 2012
Journal Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

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Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Michael J. Cherry, Peter D’Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O’Donovan, Francis Ouellette, Kim D. Pruitt … Raja Mazumder
Database, Volume 2012, 2012, bas036, https://doi.org/10.1093/database/bas036
Published: 29 October 2012