Authors: K. Vijay-Shanker
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Journal Article

emiRIT: a text-mining-based resource for microRNA information

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Debarati Roychowdhury, Samir Gupta, Xihan Qin, Cecilia N Arighi, K Vijay-Shanker
Database, Volume 2021, 2021, baab031, https://doi.org/10.1093/database/baab031
Published: 28 May 2021
Journal Article

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

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Jia Ren, Gang Li, Karen Ross, Cecilia Arighi, Peter McGarvey, Shruti Rao, Julie Cowart, Subha Madhavan, K Vijay-Shanker, Cathy H Wu
Database, Volume 2018, 2018, bay128, https://doi.org/10.1093/database/bay128
Published: 14 December 2018
Journal Article

DEXTER: Disease-Expression Relation Extraction from Text

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Samir Gupta, Hayley Dingerdissen, Karen E Ross, Yu Hu, Cathy H Wu, Raja Mazumder, K Vijay-Shanker
Database, Volume 2018, 2018, bay045, https://doi.org/10.1093/database/bay045
Published: 30 May 2018
Journal Article

eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality

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Ruoyao Ding, Emmanuel Boutet, Damien Lieberherr, Michel Schneider, Michael Tognolli, Cathy H Wu, K Vijay-Shanker, Cecilia N Arighi
Database, Volume 2017, 2017, bax081, https://doi.org/10.1093/database/bax081
Published: 13 November 2017
Journal Article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article

BioC-compatible full-text passage detection for protein–protein interactions using extended dependency graph

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Yifan Peng, Cecilia Arighi, Cathy H. Wu, K. Vijay-Shanker
Database, Volume 2016, 2016, baw072, https://doi.org/10.1093/database/baw072
Published: 11 May 2016
Journal Article

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system

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Catalina O. Tudor, Karen E. Ross, Gang Li, K. Vijay-Shanker, Cathy H. Wu, Cecilia N. Arighi
Database, Volume 2015, 2015, bav020, https://doi.org/10.1093/database/bav020
Published: 31 March 2015
Journal Article

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

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Manabu Torii, Gang Li, Zhiwen Li, Rose Oughtred, Francesca Diella, Irem Çelen, Cecilia N. Arighi, Hongzhan Huang, K. Vijay-Shanker, Cathy H. Wu
Database, Volume 2014, 2014, bau081, https://doi.org/10.1093/database/bau081
Published: 13 August 2014
Journal Article

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system

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Yifan Peng, Catalina O. Tudor, Manabu Torii, Cathy H. Wu, K. Vijay-Shanker
Database, Volume 2014, 2014, bau038, https://doi.org/10.1093/database/bau038
Published: 21 May 2014
Journal Article

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

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Catalina O. Tudor, Cecilia N. Arighi, Qinghua Wang, Cathy H. Wu, K. Vijay-Shanker
Database, Volume 2012, 2012, bas044, https://doi.org/10.1093/database/bas044
Published: 05 December 2012
Journal Article

Developing a biocuration workflow for AgBase, a non-model organism database

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Lakshmi Pillai, Philippe Chouvarine, Catalina O. Tudor, Carl J. Schmidt, K. Vijay-Shanker, Fiona M. McCarthy
Database, Volume 2012, 2012, bas038, https://doi.org/10.1093/database/bas038
Published: 15 November 2012