Authors: Julien Gobeill
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Journal Article

Assessing the use of supplementary materials to improve genomic variant discovery

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Emilie Pasche, Anaïs Mottaz, Julien Gobeill, Pierre-André Michel, Déborah Caucheteur, Nona Naderi, Patrick Ruch
Database, Volume 2023, 2023, baad017, https://doi.org/10.1093/database/baad017
Published: 31 March 2023
Journal Article

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

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Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N Arighi, Patrick Ruch
Database, Volume 2020, 2020, baaa026, https://doi.org/10.1093/database/baaa026
Published: 04 May 2020
Journal Article

Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt

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Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Daniel Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
Database, Volume 2018, 2018, bay129, https://doi.org/10.1093/database/bay129
Published: 14 December 2018
Journal Article

Overview of the BioCreative VI text-mining services for Kinome Curation Track

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Julien Gobeill, Pascale Gaudet, Daniel Dopp, Adam Morrone, Indika Kahanda, Yi-Yu Hsu, Chih-Hsuan Wei, Zhiyong Lu, Patrick Ruch
Database, Volume 2018, 2018, bay104, https://doi.org/10.1093/database/bay104
Published: 17 October 2018
Journal Article

Improving average ranking precision in user searches for biomedical research datasets

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Douglas Teodoro, Luc Mottin, Julien Gobeill, Arnaud Gaudinat, Thérèse Vachon, Patrick Ruch
Database, Volume 2017, 2017, bax083, https://doi.org/10.1093/database/bax083
Published: 06 November 2017
Journal Article

Triage by ranking to support the curation of protein interactions

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Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch
Database, Volume 2017, 2017, bax040, https://doi.org/10.1093/database/bax040
Published: 11 June 2017
Journal Article

neXtA 5 : accelerating annotation of articles via automated approaches in neXtProt

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Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
Database, Volume 2016, 2016, baw098, https://doi.org/10.1093/database/baw098
Published: 02 July 2016
Journal Article

Deep Question Answering for protein annotation

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Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch
Database, Volume 2015, 2015, bav081, https://doi.org/10.1093/database/bav081
Published: 16 September 2015
Journal Article

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification

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Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Database, Volume 2014, 2014, bau088, https://doi.org/10.1093/database/bau088
Published: 04 September 2014
Journal Article

Overview of the gene ontology task at BioCreative IV

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Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu … Zhiyong Lu
Database, Volume 2014, 2014, bau086, https://doi.org/10.1093/database/bau086
Published: 25 August 2014
Journal Article

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases

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Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Database, Volume 2013, 2013, bat041, https://doi.org/10.1093/database/bat041
Published: 09 July 2013