Authors: Judith A. Blake
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Journal Article

Integrating image caption information into biomedical document classification in support of biocuration

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Xiangying Jiang, Pengyuan Li, James Kadin, Judith A Blake, Martin Ringwald, Hagit Shatkay
Database, Volume 2020, 2020, baaa024, https://doi.org/10.1093/database/baaa024
Published: 15 April 2020
Journal Article

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance

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Xiangying Jiang, Martin Ringwald, Judith A Blake, Cecilia Arighi, Gongbo Zhang, Hagit Shatkay
Database, Volume 2019, 2019, baz045, https://doi.org/10.1093/database/baz045
Published: 25 April 2019
Journal Article

Curating gene sets: challenges and opportunities for integrative analysis

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Jason Bubier, David Hill, Gaurab Mukherjee, Timothy Reynolds, Erich J Baker, Alexander Berger, Jake Emerson, Judith A Blake, Elissa J Chesler
Database, Volume 2019, 2019, baz036, https://doi.org/10.1093/database/baz036
Published: 19 March 2019
Journal Article

Modeling biochemical pathways in the gene ontology

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David P. Hill, Peter D’Eustachio, Tanya Z. Berardini, Christopher J. Mungall, Nikolai Renedo, Judith A. Blake
Database, Volume 2016, 2016, baw126, https://doi.org/10.1093/database/baw126
Published: 01 September 2016
Journal Article

Gene regulation knowledge commons: community action takes care of DNA binding transcription factors

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Sushil Tripathi, Steven Vercruysse, Konika Chawla, Karen R. Christie, Judith A. Blake, Rachael P. Huntley, Sandra Orchard, Henning Hermjakob, Liv Thommesen, Astrid Lægreid, Martin Kuiper
Database, Volume 2016, 2016, baw088, https://doi.org/10.1093/database/baw088
Published: 05 June 2016
Journal Article

Standardized description of scientific evidence using the Evidence Ontology (ECO)

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Marcus C. Chibucos, Christopher J. Mungall, Rama Balakrishnan, Karen R. Christie, Rachael P. Huntley, Owen White, Judith A. Blake, Suzanna E. Lewis, Michelle Giglio
Database, Volume 2014, 2014, bau075, https://doi.org/10.1093/database/bau075
Published: 21 July 2014
Journal Article

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort

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Sushil Tripathi, Karen R. Christie, Rama Balakrishnan, Rachael Huntley, David P. Hill, Liv Thommesen, Judith A. Blake, Martin Kuiper, Astrid Lægreid
Database, Volume 2013, 2013, bat062, https://doi.org/10.1093/database/bat062
Published: 27 August 2013
Journal Article

Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database

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Harold J. Drabkin, Judith A. Blake, for the Mouse Genome Informatics Database
Database, Volume 2012, 2012, bas045, https://doi.org/10.1093/database/bas045
Published: 29 October 2012
Journal Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

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Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Michael J. Cherry, Peter D’Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O’Donovan, Francis Ouellette, Kim D. Pruitt … Raja Mazumder
Database, Volume 2012, 2012, bas036, https://doi.org/10.1093/database/bas036
Published: 29 October 2012
Journal Article

Disease model curation improvements at Mouse Genome Informatics

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Susan M. Bello, Joel E. Richardson, Allan P. Davis, Thomas C. Wiegers, Carolyn J. Mattingly, Mary E. Dolan, Cynthia L. Smith, Judith A. Blake, Janan T. Eppig
Database, Volume 2012, 2012, bar063, https://doi.org/10.1093/database/bar063
Published: 13 February 2012
Journal Article

Towards BioDBcore: a community-defined information specification for biological databases

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Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock … on behalf of the BioDBCore working group
Database, Volume 2011, 2011, baq027, https://doi.org/10.1093/database/baq027
Published: 04 January 2011