Authors: Jie Zheng
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Journal Article

SynLethDB 2.0: a web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery

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Jie Wang, Min Wu, Xuhui Huang, Li Wang, Sophia Zhang, Hui Liu, Jie Zheng
Database, Volume 2022, 2022, baac030, https://doi.org/10.1093/database/baac030
Published: 14 May 2022
Journal Article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

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Rebecca Jackson, Nicolas Matentzoglu, James A Overton, Randi Vita, James P Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D Diehl, Damion M Dooley, William D Duncan, Nomi L Harris, Melissa A Haendel, Suzanna E Lewis, Darren A Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M Schriml, Barry Smith … Bjoern Peters
Database, Volume 2021, 2021, baab069, https://doi.org/10.1093/database/baab069
Published: 26 October 2021
Journal Article

Standardization of assay representation in the Ontology for Biomedical Investigations

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Randi Vita, Jie Zheng, Rebecca Jackson, Damion Dooley, James A Overton, Mark A Miller, Daniel C Berrios, Richard H Scheuermann, Yongqun He, Hande Küçük McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B Jain, Marcus C Chibucos, John Judkins, Michelle G Giglio, Irene Y Feng, Gully Burns, Matthew H Brush … Christian J Stoeckert Jr
Database, Volume 2021, 2021, baab040, https://doi.org/10.1093/database/baab040
Published: 09 July 2021
Journal Article

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach

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Philippe Rocca-Serra, Ramona Walls, Jacob Parnell, Rachel Gallery, Jie Zheng, Susanna-Assunta Sansone, Alejandra Gonzalez-Beltran
Database, Volume 2015, 2015, bau132, https://doi.org/10.1093/database/bau132
Published: 28 January 2015
Journal Article

AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments

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Jie Zheng, Julia Stoyanovich, Elisabetta Manduchi, Junmin Liu, Christian J. Stoeckert, Jr
Database, Volume 2011, 2011, bar045, https://doi.org/10.1093/database/bar045
Published: 21 December 2011