Authors: Jan+Smida
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Journal Article

BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community

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Peter Selby, Rafael Abbeloos, Anne-Francoise Adam-Blondon, Francisco J Agosto-Pérez, Michael Alaux, Isabelle Alic, Khaled Al-Shamaa, Johan Steven Aparicio, Jan Erik Backlund, Aldrin Batac, Sebastian Beier, Gabriel Besombes, Alice Boizet, Matthijs Brouwer, Terry Casstevens, Arnaud Charleroy, Keo Corak, Chaney Courtney, Mariano Crimi … The BrAPI Consortium
Database, Volume 2025, 2025, baaf048, https://doi.org/10.1093/database/baaf048
Published: 24 September 2025
Journal Article

The TOXIN knowledge graph: supporting animal-free risk assessment of cosmetics

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Sara Sepehri, Anja Heymans, Dinja De Win, Jan Maushagen, Audrey Sanctorum, Christophe Debruyne, Robim M Rodrigues, Joery De Kock, Vera Rogiers, Olga De Troyer, Tamara Vanhaecke
Database, Volume 2025, 2025, baae121, https://doi.org/10.1093/database/baae121
Published: 28 January 2025
Journal Article

The relational modeling of hierarchical data in biodiversity databases

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Petr Novotný, Jan Wild
Database, Volume 2024, 2024, baae107, https://doi.org/10.1093/database/baae107
Published: 10 October 2024
Journal Article

SmartWoodID—an image collection of large end-grain surfaces to support wood identification systems

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Ruben De Blaere, Kévin Lievens, Dieter Van Hassel, Victor Deklerck, Tom De Mil, Wannes Hubau, Joris Van Acker, Nils Bourland, Jan Verwaeren, Jan Van den Bulcke, Hans Beeckman
Database, Volume 2023, 2023, baad034, https://doi.org/10.1093/database/baad034
Published: 13 May 2023
Journal Article

CerealsDB—new tools for the analysis of the wheat genome: update 2020

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Paul A Wilkinson, Alexandra M Allen, Simon Tyrrell, Luzie U Wingen, Xingdong Bian, Mark O Winfield, Amanda Burridge, Daniel S Shaw, Jan Zaucha, Simon Griffiths, Robert P Davey, Keith J Edwards, Gary L A Barker
Database, Volume 2020, 2020, baaa060, https://doi.org/10.1093/database/baaa060
Published: 04 August 2020
Journal Article

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans

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Basten L Snoek, Mark G Sterken, Margi Hartanto, Albert-Jan van Zuilichem, Jan E Kammenga, Dick de Ridder, Harm Nijveen
Database, Volume 2020, 2020, baz149, https://doi.org/10.1093/database/baz149
Published: 21 January 2020
Journal Article

rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots

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Jan Jelínek, David Hoksza, Jan Hajič, Jan Pešek, Jan Drozen, Tomáš Hladík, Michal Klimpera, Jiří Vohradský, Josef Pánek
Database, Volume 2019, 2019, baz047, https://doi.org/10.1093/database/baz047
Published: 25 April 2019
Journal Article

Automatic identification of relevant chemical compounds from patents

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Saber A Akhondi, Hinnerk Rey, Markus Schwörer, Michael Maier, John Toomey, Heike Nau, Gabriele Ilchmann, Mark Sheehan, Matthias Irmer, Claudia Bobach, Marius Doornenbal, Michelle Gregory, Jan A Kors
Database, Volume 2019, 2019, baz001, https://doi.org/10.1093/database/baz001
Published: 30 January 2019
Journal Article

TISSUES 2.0: an integrative web resource on mammalian tissue expression

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Oana Palasca, Alberto Santos, Christian Stolte, Jan Gorodkin, Lars Juhl Jensen
Database, Volume 2018, 2018, bay028, https://doi.org/10.1093/database/bay028
Published: 16 March 2018
Journal Article

TISSUES 2.0: an integrative web resource on mammalian tissue expression

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Oana Palasca, Alberto Santos, Christian Stolte, Jan Gorodkin, Lars Juhl Jensen
Database, Volume 2018, 2018, bay003, https://doi.org/10.1093/database/bay003
Published: 12 February 2018
Journal Article

RetrogeneDB–a database of plant and animal retrocopies

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Wojciech Rosikiewicz, Michał Kabza, Jan G. Kosiński, Joanna Ciomborowska-Basheer, Magdalena R. Kubiak, Izabela Makałowska
Database, Volume 2017, 2017, bax038, https://doi.org/10.1093/database/bax038
Published: 14 July 2017
Journal Article

decodeRNA— predicting non-coding RNA functions using guilt-by-association

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Steve Lefever, Jasper Anckaert, Pieter-Jan Volders, Manuel Luypaert, Jo Vandesompele, Pieter Mestdagh
Database, Volume 2017, 2017, bax042, https://doi.org/10.1093/database/bax042
Published: 11 June 2017
Journal Article

RAIN: RNA–protein Association and Interaction Networks

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Alexander Junge, Jan C. Refsgaard, Christian Garde, Xiaoyong Pan, Alberto Santos, Ferhat Alkan, Christian Anthon, Christian von Mering, Christopher T. Workman, Lars Juhl Jensen, Jan Gorodkin
Database, Volume 2017, 2017, baw167, https://doi.org/10.1093/database/baw167
Published: 10 January 2017
Journal Article

3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale

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Giovanni Mazzocco, Michal Lazniewski, Piotr Migdał, Teresa Szczepińska, Jan P. Radomski, Dariusz Plewczynski
Database, Volume 2016, 2016, baw130, https://doi.org/10.1093/database/baw130
Published: 01 October 2016
Journal Article

The Ensembl gene annotation system

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Bronwen L. Aken, Sarah Ayling, Daniel Barrell, Laura Clarke, Valery Curwen, Susan Fairley, Julio Fernandez Banet, Konstantinos Billis, Carlos García Girón, Thibaut Hourlier, Kevin Howe, Andreas Kähäri, Felix Kokocinski, Fergal J. Martin, Daniel N. Murphy, Rishi Nag, Magali Ruffier, Michael Schuster, Y. Amy Tang … Stephen M. J. Searle
Database, Volume 2016, 2016, baw093, https://doi.org/10.1093/database/baw093
Published: 23 June 2016
Journal Article

Chemical entity recognition in patents by combining dictionary-based and statistical approaches

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Saber A. Akhondi, Ewoud Pons, Zubair Afzal, Herman van Haagen, Benedikt F.H. Becker, Kristina M. Hettne, Erik M. van Mulligen, Jan A. Kors
Database, Volume 2016, 2016, baw061, https://doi.org/10.1093/database/baw061
Published: 02 May 2016
Journal Article

Extraction of chemical-induced diseases using prior knowledge and textual information

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Ewoud Pons, Benedikt F.H. Becker, Saber A. Akhondi, Zubair Afzal, Erik M. van Mulligen, Jan A. Kors
Database, Volume 2016, 2016, baw046, https://doi.org/10.1093/database/baw046
Published: 14 April 2016
Journal Article

Fishing for data and sorting the catch: assessing the data quality, completeness and fitness for use of data in marine biogeographic databases

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Leen Vandepitte, Samuel Bosch, Lennert Tyberghein, Filip Waumans, Bart Vanhoorne, Francisco Hernandez, Olivier De Clerck, Jan Mees
Database, Volume 2015, 2015, bau125, https://doi.org/10.1093/database/bau125
Published: 28 January 2015
Journal Article

miRBase Tracker: keeping track of microRNA annotation changes

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Gert Van Peer, Steve Lefever, Jasper Anckaert, Anneleen Beckers, Ali Rihani, Alan Van Goethem, Pieter-Jan Volders, Fjoralba Zeka, Maté Ongenaert, Pieter Mestdagh, Jo Vandesompele
Database, Volume 2014, 2014, bau080, https://doi.org/10.1093/database/bau080
Published: 24 August 2014
Journal Article

Structuring osteosarcoma knowledge: an osteosarcoma-gene association database based on literature mining and manual annotation

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Kathrin Poos, Jan Smida, Michaela Nathrath, Doris Maugg, Daniel Baumhoer, Anna Neumann, Eberhard Korsching
Database, Volume 2014, 2014, bau042, https://doi.org/10.1093/database/bau042
Published: 27 May 2014