Authors: James A. Overton
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Journal Article

A change language for ontologies and knowledge graphs

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Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J Harry Caufield, John B Graybeal, Nomi L Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A Overton, Mark A Musen, Christopher J Mungall
Database, Volume 2025, 2025, baae133, https://doi.org/10.1093/database/baae133
Published: 22 January 2025
Journal Article

Coronavirus Immunotherapeutic Consortium Database

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Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L Schendel, Haoyang Li, Kathryn M Hastie, S Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E Munt, Mary Osei-Twum, Caroline Atyeo, James A Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima … Bjoern Peters
Database, Volume 2023, 2023, baac112, https://doi.org/10.1093/database/baac112
Published: 10 February 2023
Journal Article

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies

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Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P Balhoff, Seth Carbon, Anita R Caron, William D Duncan, Joe E Flack, Melissa Haendel, Nomi L Harris, William R Hogan, Charles Tapley Hoyt, Rebecca C Jackson, HyeongSik Kim, Huseyin Kir, Martin Larralde, Julie A McMurry, James A Overton, Bjoern Peters … David Osumi-Sutherland
Database, Volume 2022, 2022, baac087, https://doi.org/10.1093/database/baac087
Published: 08 October 2022
Journal Article

A Simple Standard for Sharing Ontological Mappings (SSSOM)

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Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt … Christopher J Mungall
Database, Volume 2022, 2022, baac035, https://doi.org/10.1093/database/baac035
Published: 25 May 2022
Journal Article

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

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Rebecca Jackson, Nicolas Matentzoglu, James A Overton, Randi Vita, James P Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D Diehl, Damion M Dooley, William D Duncan, Nomi L Harris, Melissa A Haendel, Suzanna E Lewis, Darren A Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M Schriml, Barry Smith … Bjoern Peters
Database, Volume 2021, 2021, baab069, https://doi.org/10.1093/database/baab069
Published: 26 October 2021
Journal Article

Standardization of assay representation in the Ontology for Biomedical Investigations

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Randi Vita, Jie Zheng, Rebecca Jackson, Damion Dooley, James A Overton, Mark A Miller, Daniel C Berrios, Richard H Scheuermann, Yongqun He, Hande Küçük McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B Jain, Marcus C Chibucos, John Judkins, Michelle G Giglio, Irene Y Feng, Gully Burns, Matthew H Brush … Christian J Stoeckert Jr
Database, Volume 2021, 2021, baab040, https://doi.org/10.1093/database/baab040
Published: 09 July 2021
Journal Article

An immunologically friendly classification of non-peptidic ligands

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Lindy Edwards, Rebecca Jackson, James A Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette
Database, Volume 2021, 2021, baab014, https://doi.org/10.1093/database/baab014
Published: 27 March 2021
Journal Article

A structured model for immune exposures

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Randi Vita, James A Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H Kleinstein, Alessandro Sette, Bjoern Peters
Database, Volume 2020, 2020, baaa016, https://doi.org/10.1093/database/baaa016
Published: 11 April 2020
Journal Article

Identification of errors in the IEDB using ontologies

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Randi Vita, James A Overton, Bjoern Peters
Database, Volume 2018, 2018, bay005, https://doi.org/10.1093/database/bay005
Published: 22 February 2018
Journal Article

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability

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Randi Vita, James A Overton, Christopher J Mungall, Alessandro Sette, Bjoern Peters
Database, Volume 2018, 2018, bax105, https://doi.org/10.1093/database/bax105
Published: 19 February 2018
Journal Article

Better living through ontologies at the Immune Epitope Database

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Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters
Database, Volume 2017, 2017, bax014, https://doi.org/10.1093/database/bax014
Published: 18 March 2017