Authors: J Michael Cherry
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Journal Article

Incorporation of a unified protein abundance dataset into the Saccharomyces genome database

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Robert S Nash, Shuai Weng, Kalpana Karra, Edith D Wong, Stacia R Engel, J Michael Cherry, SGD Project
Database, Volume 2020, 2020, baaa008, https://doi.org/10.1093/database/baaa008
Published: 04 March 2020
Journal Article

Integration of macromolecular complex data into the Saccharomyces Genome Database

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Edith D Wong, Marek S Skrzypek, Shuai Weng, Gail Binkley, Birgit H M Meldal, Livia Perfetto, Sandra E Orchard, Stacia R Engel, J Michael Cherry, the SGD Project
Database, Volume 2019, 2019, baz008, https://doi.org/10.1093/database/baz008
Published: 04 February 2019
Journal Article

Updated regulation curation model at the Saccharomyces Genome Database

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Stacia R Engel, Marek S Skrzypek, Sage T Hellerstedt, Edith D Wong, Robert S Nash, Shuai Weng, Gail Binkley, Travis K Sheppard, Kalpana Karra, J Michael Cherry
Database, Volume 2018, 2018, bay007, https://doi.org/10.1093/database/bay007
Published: 27 February 2018
Journal Article

Prevention of data duplication for high throughput sequencing repositories

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Idan Gabdank, Esther T Chan, Jean M Davidson, Jason A Hilton, Carrie A Davis, Ulugbek K Baymuradov, Aditi Narayanan, Kathrina C Onate, Keenan Graham, Stuart R Miyasato, Timothy R Dreszer, J Seth Strattan, Otto Jolanki, Forrest Y Tanaka, Benjamin C Hitz, Cricket A Sloan, J Michael Cherry
Database, Volume 2018, 2018, bay008, https://doi.org/10.1093/database/bay008
Published: 27 February 2018
Journal Article

Curated protein information in the Saccharomyces genome database

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Sage T. Hellerstedt, Robert S. Nash, Shuai Weng, Kelley M. Paskov, Edith D. Wong, Kalpana Karra, Stacia R. Engel, J. Michael Cherry
Database, Volume 2017, 2017, bax011, https://doi.org/10.1093/database/bax011
Published: 11 March 2017
Journal Article

Outreach and online training services at the Saccharomyces Genome Database

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Kevin A. MacPherson, Barry Starr, Edith D. Wong, Kyla S. Dalusag, Sage T. Hellerstedt, Olivia W. Lang, Robert S. Nash, Marek S. Skrzypek, Stacia R. Engel, J. Michael Cherry
Database, Volume 2017, 2017, bax002, https://doi.org/10.1093/database/bax002
Published: 26 February 2017
Journal Article

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database

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Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C. Costanzo, Kyla Dalusag, Janos Demeter, Stacia Engel, Sage T. Hellerstedt, Kalpana Karra, Benjamin C. Hitz, Robert S. Nash, Kelley Paskov, Travis Sheppard, Marek Skrzypek, Shuai Weng, Edith Wong, J. Michael Cherry
Database, Volume 2016, 2016, baw074, https://doi.org/10.1093/database/baw074
Published: 31 May 2016
Journal Article

From one to many: expanding the Saccharomyces cerevisiae reference genome panel

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Stacia R. Engel, Shuai Weng, Gail Binkley, Kelley Paskov, Giltae Song, J. Michael Cherry
Database, Volume 2016, 2016, baw020, https://doi.org/10.1093/database/baw020
Published: 17 March 2016
Journal Article

Principles of metadata organization at the ENCODE data coordination center

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Eurie L. Hong, Cricket A. Sloan, Esther T. Chan, Jean M. Davidson, Venkat S. Malladi, J. Seth Strattan, Benjamin C. Hitz, Idan Gabdank, Aditi K. Narayanan, Marcus Ho, Brian T. Lee, Laurence D. Rowe, Timothy R. Dreszer, Greg R. Roe, Nikhil R. Podduturi, Forrest Tanaka, Jason A. Hilton, J. Michael Cherry
Database, Volume 2016, 2016, baw001, https://doi.org/10.1093/database/baw001
Published: 15 March 2016
Journal Article

Ontology application and use at the ENCODE DCC

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Venkat S. Malladi, Drew T. Erickson, Nikhil R. Podduturi, Laurence D. Rowe, Esther T. Chan, Jean M. Davidson, Benjamin C. Hitz, Marcus Ho, Brian T. Lee, Stuart Miyasato, Gregory R. Roe, Matt Simison, Cricket A. Sloan, J. Seth Strattan, Forrest Tanaka, W. James Kent, J. Michael Cherry, Eurie L. Hong
Database, Volume 2015, 2015, bav010, https://doi.org/10.1093/database/bav010
Published: 16 March 2015
Journal Article

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration

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Pascale Gaudet, Monica Munoz-Torres, Marc Robinson-Rechavi, Teresa Attwood, Alex Bateman, J. Michael Cherry, Renate Kania, Claire O'Donovan, Chisato Yamasaki
Database, Volume 2013, 2013, bat077, https://doi.org/10.1093/database/bat077
Published: 06 December 2013
Journal Article

A guide to best practices for Gene Ontology (GO) manual annotation

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Rama Balakrishnan, Midori A. Harris, Rachael Huntley, Kimberly Van Auken, J. Michael Cherry
Database, Volume 2013, 2013, bat054, https://doi.org/10.1093/database/bat054
Published: 09 July 2013
Journal Article

The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database

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Stacia R. Engel, J. Michael Cherry
Database, Volume 2013, 2013, bat012, https://doi.org/10.1093/database/bat012
Published: 13 March 2013
Journal Article

The YeastGenome app: the Saccharomyces Genome Database at your fingertips

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Edith D. Wong, Kalpana Karra, Benjamin C. Hitz, Eurie L. Hong, J. Michael Cherry
Database, Volume 2013, 2013, bat004, https://doi.org/10.1093/database/bat004
Published: 07 February 2013
Journal Article

YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

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Rama Balakrishnan, Julie Park, Kalpana Karra, Benjamin C. Hitz, Gail Binkley, Eurie L. Hong, Julie Sullivan, Gos Micklem, J. Michael Cherry
Database, Volume 2012, 2012, bar062, https://doi.org/10.1093/database/bar062
Published: 13 February 2012
Journal Article

Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report

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Esther T. Chan, J. Michael Cherry
Database, Volume 2012, 2012, bar057, https://doi.org/10.1093/database/bar057
Published: 13 February 2012
Journal Article

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations

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Julie Park, Maria C. Costanzo, Rama Balakrishnan, J. Michael Cherry, Eurie L. Hong
Database, Volume 2012, 2012, bas001, https://doi.org/10.1093/database/bas001
Published: 13 February 2012
Journal Article

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study

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Maria C. Costanzo, Julie Park, Rama Balakrishnan, J. Michael Cherry, Eurie L. Hong
Database, Volume 2011, 2011, bar004, https://doi.org/10.1093/database/bar004
Published: 15 March 2011
Journal Article

Towards BioDBcore: a community-defined information specification for biological databases

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Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock … on behalf of the BioDBCore working group
Database, Volume 2011, 2011, baq027, https://doi.org/10.1093/database/baq027
Published: 04 January 2011
Journal Article

New mutant phenotype data curation system in the Saccharomyces Genome Database

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Maria C. Costanzo, Marek S. Skrzypek, Robert Nash, Edith Wong, Gail Binkley, Stacia R. Engel, Benjamin Hitz, Eurie L. Hong, J. Michael Cherry, the Saccharomyces Genome Database Project
Database, Volume 2009, 2009, bap001, https://doi.org/10.1093/database/bap001
Published: 16 March 2009