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Authors: I.+Kostadinov
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Journal Article
LitSumm: large language models for literature summarization of noncoding RNAs
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Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I Petrov, Alex Bateman, Blake Sweeney
Database, Volume 2025, 2025, baaf006, https://doi.org/10.1093/database/baaf006
Published: 05 February 2025
Journal Article
Landscape of racial and ethnic health disparities in the All of Us Research Program
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Vincent Lam, Shivam Sharma, John L Spouge, I. King Jordan, Leonardo Mariño-Ramírez
Database, Volume 2024, 2024, baae082, https://doi.org/10.1093/database/baae082
Published: 30 August 2024
Journal Article
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII
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Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Almeida, Richard A. A Jonker, Sofia I. R Conceição, Diana F Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee … Zhiyong Lu
Database, Volume 2024, 2024, baae069, https://doi.org/10.1093/database/baae069
Published: 08 August 2024
Journal Article
SpadaHC: a database to improve the classification of variants in hereditary cancer genes in the Spanish population
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José M Moreno-Cabrera, Lidia Feliubadaló, Marta Pineda, Patricia Prada-Dacasa, Mireia Ramos-Muntada, Jesús Del Valle, Joan Brunet, Bernat Gel, María Currás-Freixes, Bruna Calsina, Milton E Salazar-Hidalgo, Marta Rodríguez-Balada, Bàrbara Roig, Sara Fernández-Castillejo, Mercedes Durán Domínguez, Mónica Arranz Ledo, Mar Infante Sanz, Adela Castillejo, Estela Dámaso … Conxi Lázaro
Database, Volume 2024, 2024, baae055, https://doi.org/10.1093/database/baae055
Published: 04 July 2024
Journal Article
Collecting and managing in situ banana genetic resources information (Musa spp.) using online resources and citizen science
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Christophe Jenny, Valentin Guignon, Felip Manyer I Ballester, Max Ruas, Mathieu Rouard
Database, Volume 2024, 2024, baae036, https://doi.org/10.1093/database/baae036
Published: 22 May 2024
Journal Article
CiliaMiner: an integrated database for ciliopathy genes and ciliopathies
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Merve Gül Turan, Mehmet Emin Orhan, Sebiha Cevik, Oktay I Kaplan
Database, Volume 2023, 2023, baad047, https://doi.org/10.1093/database/baad047
Published: 26 July 2023
Journal Article
The landscape of health disparities in the UK Biobank
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Shashwat Deepali Nagar, I King Jordan, Leonardo Mariño-Ramírez
Database, Volume 2023, 2023, baad026, https://doi.org/10.1093/database/baad026
Published: 26 April 2023
Journal Article
RNA-Chrom: a manually curated analytical database of RNA–chromatin interactome
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G K Ryabykh, S V Kuznetsov, Y D Korostelev, A I Sigorskikh, A A Zharikova, A A Mironov
Database, Volume 2023, 2023, baad025, https://doi.org/10.1093/database/baad025
Published: 24 April 2023
Journal Article
Standardized naming of microbiome samples in Genomes OnLine Database
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Supratim Mukherjee, Galina Ovchinnikova, Dimitri Stamatis, Cindy Tianqing Li, I-Min A Chen, Nikos C Kyrpides, T B K Reddy
Database, Volume 2023, 2023, baad001, https://doi.org/10.1093/database/baad001
Published: 16 February 2023
Journal Article
Developing a disease-specific annotation protocol for VHL gene curation using Hypothes.is
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Dena Salehipour, Kirsten M Farncombe, Veronica Andric, Safa Ansar, Sean Delong, Eric Li, Samantha Macpherson, Sarah Ridd, Deborah I Ritter, Courtney Thaxton, Raymond H Kim
Database, Volume 2023, 2023, baac109, https://doi.org/10.1093/database/baac109
Published: 06 January 2023
Journal Article
Creation and evaluation of full-text literature-derived, feature-weighted disease models of genetically determined developmental disorders
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T.M Yates, A Lain, J Campbell, D R FitzPatrick, T I Simpson
Database, Volume 2022, 2022, baac038, https://doi.org/10.1093/database/baac038
Published: 07 June 2022
Journal Article
Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration
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Dhouha Grissa, Alexander Junge, Tudor I Oprea, Lars Juhl Jensen
Database, Volume 2022, 2022, baac019, https://doi.org/10.1093/database/baac019
Published: 24 March 2022
Journal Article
lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data
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Yi-Wei Lee, Ming Chen, I-Fang Chung, Ting-Yu Chang
Database, Volume 2021, 2021, baab053, https://doi.org/10.1093/database/baab053
Published: 31 August 2021
Journal Article
MUSTARD—a comprehensive resource of mutation-specific therapies in cancer
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Gauri Mittal, Anu R I, Aastha Vatsyayan, Kavita Pandhare, Vinod Scaria
Database, Volume 2021, 2021, baab042, https://doi.org/10.1093/database/baab042
Published: 26 July 2021
Journal Article
MENSAdb: a thorough structural analysis of membrane protein dimers
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Pedro Matos-Filipe, António J Preto, Panagiotis I Koukos, Joana Mourão, Alexandre M J J Bonvin, Irina S Moreira
Database, Volume 2021, 2021, baab013, https://doi.org/10.1093/database/baab013
Published: 05 April 2021
Journal Article
HIR V2: a human interactome resource for the biological interpretation of differentially expressed genes via gene set linkage analysis
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Wen-Ping Guo, Xiao-Bao Ding, Jie Jin, Hai-bo Zhang, Qiao-lei Yang, Peng-Cheng Chen, Heng Yao, L i Ruan, Yu-Tian Tao, Xin Chen
Database, Volume 2021, 2021, baab009, https://doi.org/10.1093/database/baab009
Published: 02 March 2021
Journal Article
InSexBase: an annotated genomic resource of sex chromosomes and sex-biased genes in insects
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X i Chen, Yang Mei, Mengyao Chen, Dong Jing, Yumin He, Feiling Liu, Kang He, Fei Li
Database, Volume 2021, 2021, baab001, https://doi.org/10.1093/database/baab001
Published: 28 January 2021
Journal Article
BarleyVarDB: a database of barley genomic variation
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Cong Tan, Brett Chapman, Penghao Wang, Qisen Zhang, Gaofeng Zhou, Xiao-qi Zhang, Roberto A Barrero, Matthew I Bellgard, Chengdao Li
Database, Volume 2020, 2020, baaa091, https://doi.org/10.1093/database/baaa091
Published: 28 November 2020
Journal Article
The IMEx coronavirus interactome: an evolving map of Coronaviridae–host molecular interactions
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L Perfetto, C Pastrello, N del-Toro, M Duesbury, M Iannuccelli, M Kotlyar, L Licata, B Meldal, K Panneerselvam, S Panni, N Rahimzadeh, S Ricard-Blum, L Salwinski, A Shrivastava, G Cesareni, M Pellegrini, S Orchard, I Jurisica, H Hermjakob, P Porras
Database, Volume 2020, 2020, baaa096, https://doi.org/10.1093/database/baaa096
Published: 18 November 2020
Journal Article
An open-source GIS-enabled lookup service for Nagoya Protocol party information
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Hendrikje Seifert, Marc Weber, Frank Oliver Glöckner, Ivaylo Kostadinov
Database, Volume 2020, 2020, baaa014, https://doi.org/10.1093/database/baaa014
Published: 11 April 2020