Authors: Hongfang Liu
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Journal Article

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

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Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altınel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang … Zhiyong Lu
Database, Volume 2019, 2019, bay147, https://doi.org/10.1093/database/bay147
Published: 28 January 2019
Journal Article

Extracting chemical–protein relations using attention-based neural networks

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Sijia Liu, Feichen Shen, Ravikumar Komandur Elayavilli, Yanshan Wang, Majid Rastegar-Mojarad, Vipin Chaudhary, Hongfang Liu
Database, Volume 2018, 2018, bay102, https://doi.org/10.1093/database/bay102
Published: 08 October 2018
Journal Article

Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts

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Yanshan Wang, Majid Rastegar-Mojarad, Ravikumar Komandur-Elayavilli, Hongfang Liu
Database, Volume 2017, 2017, bax091, https://doi.org/10.1093/database/bax091
Published: 20 December 2017
Journal Article

BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences

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K.E. Ravikumar, Majid Rastegar-Mojarad, Hongfang Liu
Database, Volume 2017, 2017, baw156, https://doi.org/10.1093/database/baw156
Published: 26 February 2017
Journal Article

BELTracker: evidence sentence retrieval for BEL statements

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Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Hongfang Liu
Database, Volume 2016, 2016, baw079, https://doi.org/10.1093/database/baw079
Published: 12 May 2016
Journal Article

Integrating information retrieval with distant supervision for Gene Ontology annotation

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Dongqing Zhu, Dingcheng Li, Ben Carterette, Hongfang Liu
Database, Volume 2014, 2014, bau087, https://doi.org/10.1093/database/bau087
Published: 01 September 2014
Journal Article

Overview of the gene ontology task at BioCreative IV

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Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu … Zhiyong Lu
Database, Volume 2014, 2014, bau086, https://doi.org/10.1093/database/bau086
Published: 25 August 2014