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Authors: Henning Hermjakob
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Journal Article
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes
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Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob … Guanming Wu
Database, Volume 2024, 2024, baae031, https://doi.org/10.1093/database/baae031
Published: 07 May 2024
Journal Article
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study
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Simona Panni, Kalpana Panneerselvam, Pablo Porras, Margaret Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra Orchard
Database, Volume 2023, 2023, baad066, https://doi.org/10.1093/database/baad066
Published: 11 October 2023
Journal Article
Reactome and ORCID—fine-grained credit attribution for community curation
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Guilherme Viteri, Lisa Matthews, Thawfeek Varusai, Marc Gillespie, Marija Milacic, Justin Cook, Joel Weiser, Solomon Shorser, Konstantinos Sidiropoulos, Antonio Fabregat, Robin Haw, Guanming Wu, Lincoln Stein, Peter D’Eustachio, Henning Hermjakob
Database, Volume 2019, 2019, baz123, https://doi.org/10.1093/database/baz123
Published: 04 December 2019
Journal Article
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors
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Sushil Tripathi, Steven Vercruysse, Konika Chawla, Karen R. Christie, Judith A. Blake, Rachael P. Huntley, Sandra Orchard, Henning Hermjakob, Liv Thommesen, Astrid Lægreid, Martin Kuiper
Database, Volume 2016, 2016, baw088, https://doi.org/10.1093/database/baw088
Published: 05 June 2016
Journal Article
Shared resources, shared costs—leveraging biocuration resources
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Sandra Orchard, Henning Hermjakob
Database, Volume 2015, 2015, bav009, https://doi.org/10.1093/database/bav009
Published: 16 March 2015
Journal Article
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study
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J. M. Villaveces, R. C. Jiménez, P. Porras, N. del-Toro, M. Duesbury, M. Dumousseau, S. Orchard, H. Choi, P. Ping, N. C. Zong, M. Askenazi, B. H. Habermann, Henning Hermjakob
Database, Volume 2015, 2015, bau131, https://doi.org/10.1093/database/bau131
Published: 03 February 2015
Journal Article
Capturing cooperative interactions with the PSI-MI format
PDF
Kim Van Roey, Sandra Orchard, Samuel Kerrien, Marine Dumousseau, Sylvie Ricard-Blum, Henning Hermjakob, Toby J. Gibson
Database, Volume 2013, 2013, bat066, https://doi.org/10.1093/database/bat066
Published: 24 September 2013
Journal Article
Towards the Collaborative Curation of the Registry underlying identifiers.org
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Nick Juty, Nicolas Le Novère, Henning Hermjakob, Camille Laibe
Database, Volume 2013, 2013, bat017, https://doi.org/10.1093/database/bat017
Published: 12 April 2013
Journal Article
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
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Gerhard Mayer, Luisa Montecchi-Palazzi, David Ovelleiro, Andrew R. Jones, Pierre-Alain Binz, Eric W. Deutsch, Matthew Chambers, Marius Kallhardt, Fredrik Levander, James Shofstahl, Sandra Orchard, Juan Antonio Vizcaíno, Henning Hermjakob, Christian Stephan, Helmut E. Meyer, Martin Eisenacher, on behalf of the HUPO-PSI Group
Database, Volume 2013, 2013, bat009, https://doi.org/10.1093/database/bat009
Published: 12 March 2013
Journal Article
PRIDE: Quality control in a proteomics data repository
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Attila Csordas, David Ovelleiro, Rui Wang, Joseph M. Foster, Daniel Ríos, Juan Antonio Vizcaíno, Henning Hermjakob
Database, Volume 2012, 2012, bas004, https://doi.org/10.1093/database/bas004
Published: 13 February 2012
Journal Article
Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations
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Nelson Ndegwa, Richard G. Côté, David Ovelleiro, Peter D'Eustachio, Henning Hermjakob, Juan A. Vizcaíno, David Croft
Database, Volume 2011, 2011, bar047, https://doi.org/10.1093/database/bar047
Published: 22 October 2011
Journal Article
The Reactome BioMart
PDF
Robin A. Haw, David Croft, Christina K. Yung, Nelson Ndegwa, Peter D'Eustachio, Henning Hermjakob, Lincoln D. Stein
Database, Volume 2011, 2011, bar031, https://doi.org/10.1093/database/bar031
Published: 17 October 2011
Journal Article
The systematic annotation of the three main GPCR families in Reactome
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Bijay Jassal, Steven Jupe, Michael Caudy, Ewan Birney, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio
Database, Volume 2010, 2010, baq018, https://doi.org/10.1093/database/baq018
Published: 29 July 2010