Authors: Fabio Rinaldi
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Journal Article

Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis

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Yalbi Itzel Balderas-Martínez, Fabio Rinaldi, Gabriela Contreras, Hilda Solano-Lira, Mishael Sánchez-Pérez, Julio Collado-Vides, Moisés Selman, Annie Pardo
Database, Volume 2017, 2017, bax030, https://doi.org/10.1093/database/bax030
Published: 22 April 2017
Journal Article

Strategies towards digital and semi-automated curation in RegulonDB

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Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes, Luis José Muñiz Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
Database, Volume 2017, 2017, bax012, https://doi.org/10.1093/database/bax029
Published: 17 April 2017
Journal Article

Strategies towards digital and semi-automated curation in RegulonDB

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Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes, Luis José Muñiz Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
Database, Volume 2017, 2017, bax012, https://doi.org/10.1093/database/bax012
Published: 18 March 2017
Journal Article

Overview of the interactive task in BioCreative V

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Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios Gkoutos, Afroza K. Irin, Lars J. Jensen … Cecilia N. Arighi
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Published: 01 September 2016
Journal Article

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language

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Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian van der Lek, Theo Mevissen, Juliane Fluck
Database, Volume 2016, 2016, baw067, https://doi.org/10.1093/database/baw067
Published: 09 July 2016
Journal Article

BioC interoperability track overview

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Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Doğan, Antonio Jimeno Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2014, 2014, bau053, https://doi.org/10.1093/database/bau053
Published: 28 June 2014
Journal Article

BioC implementations in Go, Perl, Python and Ruby

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Wanli Liu, Rezarta Islamaj Doğan, Dongseop Kwon, Hernani Marques, Fabio Rinaldi, W. John Wilbur, Donald C. Comeau
Database, Volume 2014, 2014, bau059, https://doi.org/10.1093/database/bau059
Published: 23 June 2014
Journal Article

Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12

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Socorro Gama-Castro, Fabio Rinaldi, Alejandra López-Fuentes, Yalbi Itzel Balderas-Martínez, Simon Clematide, Tilia Renate Ellendorff, Alberto Santos-Zavaleta, Hernani Marques-Madeira, Julio Collado-Vides
Database, Volume 2014, 2014, bau049, https://doi.org/10.1093/database/bau049
Published: 04 June 2014
Journal Article

BioC: a minimalist approach to interoperability for biomedical text processing

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Donald C. Comeau, Rezarta Islamaj Doğan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2013, 2013, bat064, https://doi.org/10.1093/database/bat064
Published: 18 September 2013
Journal Article

Using the OntoGene pipeline for the triage task of BioCreative 2012

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Fabio Rinaldi, Simon Clematide, Simon Hafner, Gerold Schneider, Gintarė Grigonytė, Martin Romacker, Therese Vachon
Database, Volume 2013, 2013, bas053, https://doi.org/10.1093/database/bas053
Published: 09 February 2013
Journal Article

Using ODIN for a PharmGKB revalidation experiment

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Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl-Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman
Database, Volume 2012, 2012, bas021, https://doi.org/10.1093/database/bas021
Published: 23 April 2012