Authors: Cecilia Arighi
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Journal Article

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy

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Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F Aoki-Kinoshita, Cecilia Arighi, Kristian B Axelsen, Evan Bolton, Emily Bordeleau, Nathan J Edwards, Elisa Fadda, Ten Feizi, Catherine Hayes, Callum M Ives, Hiren J Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frederique Lisacek, Yan Liu, Thomas Lütteke … Raja Mazumder
Database, Volume 2024, 2024, baae073, https://doi.org/10.1093/database/baae073
Published: 13 August 2024
Journal Article

A roadmap for the functional annotation of protein families: a community perspective

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Valérie de Crécy-lagard, Rocio Amorin de Hegedus, Cecilia Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang … Jin Xu
Database, Volume 2022, 2022, baac062, https://doi.org/10.1093/database/baac062
Published: 12 August 2022
Journal Article

RESTful API for iPTMnet: a resource for protein post-translational modification network discovery

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Sachin Gavali, Julie Cowart, Chuming Chen, Karen E Ross, Cecilia Arighi, Cathy H Wu
Database, Volume 2020, 2020, baz157, https://doi.org/10.1093/database/baz157
Published: 12 May 2020
Journal Article

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance

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Xiangying Jiang, Martin Ringwald, Judith A Blake, Cecilia Arighi, Gongbo Zhang, Hagit Shatkay
Database, Volume 2019, 2019, baz045, https://doi.org/10.1093/database/baz045
Published: 25 April 2019
Journal Article

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

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Jia Ren, Gang Li, Karen Ross, Cecilia Arighi, Peter McGarvey, Shruti Rao, Julie Cowart, Subha Madhavan, K Vijay-Shanker, Cathy H Wu
Database, Volume 2018, 2018, bay128, https://doi.org/10.1093/database/bay128
Published: 14 December 2018
Journal Article

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

Ayush Singhal, Robert Leaman, Natalie Catlett, Thomas Lemberger, Johanna McEntyre, Shawn Polson, Ioannis Xenarios, Cecilia Arighi, Zhiyong Lu
Database, Volume 2016, 2016, baw161, https://doi.org/10.1093/database/baw161
Published: 26 December 2016
Journal Article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article

BioC-compatible full-text passage detection for protein–protein interactions using extended dependency graph

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Yifan Peng, Cecilia Arighi, Cathy H. Wu, K. Vijay-Shanker
Database, Volume 2016, 2016, baw072, https://doi.org/10.1093/database/baw072
Published: 11 May 2016
Journal Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

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Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Michael J. Cherry, Peter D’Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O’Donovan, Francis Ouellette, Kim D. Pruitt … Raja Mazumder
Database, Volume 2012, 2012, bas036, https://doi.org/10.1093/database/bas036
Published: 29 October 2012
Journal Article

Text mining for the biocuration workflow

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Lynette Hirschman, Gully A. P. C Burns, Martin Krallinger, Cecilia Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-Aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert Nash, Anne-Lise Veuthey, Thomas Wiegers, Andrew G. Winter
Database, Volume 2012, 2012, bas020, https://doi.org/10.1093/database/bas020
Published: 18 April 2012