Authors: Carolyn J. Mattingly
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Journal Article

Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

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Thomas C Wiegers, Allan Peter Davis, Jolene Wiegers, Daniela Sciaky, Fern Barkalow, Brent Wyatt, Melissa Strong, Roy McMorran, Sakib Abrar, Carolyn J Mattingly
Database, Volume 2025, 2025, baaf013, https://doi.org/10.1093/database/baaf013
Published: 20 February 2025
Journal Article

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

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Jiao Li, Yueping Sun, Robin J. Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Thomas C. Wiegers, Zhiyong Lu
Database, Volume 2016, 2016, baw068, https://doi.org/10.1093/database/baw068
Published: 08 May 2016
Journal Article

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

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Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Jiao Li, Thomas C. Wiegers, Zhiyong Lu
Database, Volume 2016, 2016, baw032, https://doi.org/10.1093/database/baw032
Published: 19 March 2016
Journal Article

BioC interoperability track overview

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Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Doğan, Antonio Jimeno Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2014, 2014, bau053, https://doi.org/10.1093/database/bau053
Published: 28 June 2014
Journal Article

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification

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Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
Database, Volume 2014, 2014, bau050, https://doi.org/10.1093/database/bau050
Published: 10 June 2014
Journal Article

A CTD–Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug–disease and drug–phenotype interactions

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Allan Peter Davis, Thomas C. Wiegers, Phoebe M. Roberts, Benjamin L. King, Jean M. Lay, Kelley Lennon-Hopkins, Daniela Sciaky, Robin Johnson, Heather Keating, Nigel Greene, Robert Hernandez, Kevin J. McConnell, Ahmed E. Enayetallah, Carolyn J. Mattingly
Database, Volume 2013, 2013, bat080, https://doi.org/10.1093/database/bat080
Published: 28 November 2013
Journal Article

Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

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Allan Peter Davis, Robin J. Johnson, Kelley Lennon-Hopkins, Daniela Sciaky, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
Database, Volume 2012, 2012, bas051, https://doi.org/10.1093/database/bas051
Published: 06 December 2012
Journal Article

Collaborative biocuration—text-mining development task for document prioritization for curation

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Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
Database, Volume 2012, 2012, bas037, https://doi.org/10.1093/database/bas037
Published: 22 November 2012
Journal Article

Disease model curation improvements at Mouse Genome Informatics

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Susan M. Bello, Joel E. Richardson, Allan P. Davis, Thomas C. Wiegers, Carolyn J. Mattingly, Mary E. Dolan, Cynthia L. Smith, Judith A. Blake, Janan T. Eppig
Database, Volume 2012, 2012, bar063, https://doi.org/10.1093/database/bar063
Published: 13 February 2012
Journal Article

MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database

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Allan Peter Davis, Thomas C. Wiegers, Michael C. Rosenstein, Carolyn J. Mattingly
Database, Volume 2012, 2012, bar065, https://doi.org/10.1093/database/bar065
Published: 13 February 2012
Journal Article

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database

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Allan Peter Davis, Thomas C. Wiegers, Cynthia G. Murphy, Carolyn J. Mattingly
Database, Volume 2011, 2011, bar034, https://doi.org/10.1093/database/bar034
Published: 20 September 2011