Authors: Carlos+Romá-Mateo
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Journal Article

A comprehensive morphological database of hognose Porthidium pitvipers (Viperidae: Crotalinae)

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Carlos Patron-Rivero, Carlos Yañez-Arenas, Sara Ruane, Xavier Chiappa-Carrara, Octavio R Rojas-Soto
Database, Volume 2026, 2026, baaf085, https://doi.org/10.1093/database/baaf085
Published: 19 January 2026
Journal Article

ForestForward: visualizing and accessing integrated world forest data from the last 50 years

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E. L Tejada-Gutiérrez, J Mateo Fornés, F Solsona, R Alves
Database, Volume 2025, 2025, baaf018, https://doi.org/10.1093/database/baaf018
Published: 03 March 2025
Journal Article

LitSumm: large language models for literature summarization of noncoding RNAs

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Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I Petrov, Alex Bateman, Blake Sweeney
Database, Volume 2025, 2025, baaf006, https://doi.org/10.1093/database/baaf006
Published: 05 February 2025
Journal Article

Automatic extraction of transcriptional regulatory interactions of bacteria from biomedical literature using a BERT-based approach

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Alfredo Varela-Vega, Ali-Berenice Posada-Reyes, Carlos-Francisco Méndez-Cruz
Database, Volume 2024, 2024, baae094, https://doi.org/10.1093/database/baae094
Published: 30 August 2024
Journal Article

BioKC: a collaborative platform for curation and annotation of molecular interactions

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Carlos Vega, Marek Ostaszewski, Valentin Grouès, Reinhard Schneider, Venkata Satagopam
Database, Volume 2024, 2024, baae013, https://doi.org/10.1093/database/baae013
Published: 27 March 2024
Journal Article

aSynPEP-DB: a database of biogenic peptides for inhibiting α-synuclein aggregation

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Carlos Pintado-Grima, Oriol Bárcenas, Valentín Iglesias, Jaime Santos, Zoe Manglano-Artuñedo, Irantzu Pallarès, Michał Burdukiewicz, Salvador Ventura
Database, Volume 2023, 2023, baad084, https://doi.org/10.1093/database/baad084
Published: 27 November 2023
Journal Article

PolyQ Database—an integrated database on polyglutamine diseases

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Bernardo Estevam, Carlos A Matos, Clévio Nóbrega
Database, Volume 2023, 2023, baad060, https://doi.org/10.1093/database/baad060
Published: 18 August 2023
Journal Article

Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties

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Carlos-Francisco Méndez-Cruz, Antonio Blanchet, Alan Godínez, Ignacio Arroyo-Fernández, Socorro Gama-Castro, Sara Berenice Martínez-Luna, Cristian González-Colín, Julio Collado-Vides
Database, Volume 2020, 2020, baaa109, https://doi.org/10.1093/database/baaa109
Published: 11 December 2020
Journal Article

An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms

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Mariana Reyes-Prieto, Carlos Vargas-Chávez, Mercè Llabrés, Pere Palmer, Amparo Latorre, Andrés Moya
Database, Volume 2020, 2020, baz160, https://doi.org/10.1093/database/baz160
Published: 13 February 2020
Journal Article

CANCROX: a cross-species cancer therapy database

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Paulo Muniz de Ávila, Diego Cesar Valente e Silva, Paulo Cesar de Melo Bernardo, Ramon Gustavo Teodoro Marques da Silva, Ana Lúcia Fachin, Mozart Marins, Edilson Carlos Caritá
Database, Volume 2019, 2019, baz044, https://doi.org/10.1093/database/baz044
Published: 25 April 2019
Journal Article

MSGP: the first database of the protein components of the mammalian stress granules

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Catarina Nunes, Isa Mestre, Adriana Marcelo, Rebekah Koppenol, Carlos A Matos, Clévio Nóbrega
Database, Volume 2019, 2019, baz031, https://doi.org/10.1093/database/baz031
Published: 01 March 2019
Journal Article

PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records

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José Garcia-Pelaez, David Rodriguez, Roberto Medina-Molina, Gerardo Garcia-Rivas, Carlos Jerjes-Sánchez, Victor Trevino
Database, Volume 2019, 2019, bay137, https://doi.org/10.1093/database/bay137
Published: 08 January 2019
Journal Article

VianniaTopes: a database of predicted immunogenic peptides for Leishmania (Viannia) species

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Alejandro Llanes, Carlos Mario Restrepo, Ricardo Lleonart
Database, Volume 2018, 2018, bay111, https://doi.org/10.1093/database/bay111
Published: 25 October 2018
Journal Article

PVCbase: an integrated web resource for the PVC bacterial proteomes

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Nicola Bordin, Juan Carlos González-Sánchez, Damien P Devos
Database, Volume 2018, 2018, bay042, https://doi.org/10.1093/database/bay042
Published: 24 April 2018
Journal Article

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes

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Carlos-Francisco Méndez-Cruz, Socorro Gama-Castro, Citlalli Mejía-Almonte, Marco-Polo Castillo-Villalba, Luis-José Muñiz-Rascado, Julio Collado-Vides
Database, Volume 2017, 2017, bax070, https://doi.org/10.1093/database/bax070
Published: 26 September 2017
Journal Article

Strategies towards digital and semi-automated curation in RegulonDB

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Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes, Luis José Muñiz Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
Database, Volume 2017, 2017, bax012, https://doi.org/10.1093/database/bax029
Published: 17 April 2017
Journal Article

Strategies towards digital and semi-automated curation in RegulonDB

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Fabio Rinaldi, Oscar Lithgow, Socorro Gama-Castro, Hilda Solano, Alejandra López-Fuentes, Luis José Muñiz Rascado, Cecilia Ishida-Gutiérrez, Carlos-Francisco Méndez-Cruz, Julio Collado-Vides
Database, Volume 2017, 2017, bax012, https://doi.org/10.1093/database/bax012
Published: 18 March 2017
Journal Article

The Ensembl gene annotation system

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Bronwen L. Aken, Sarah Ayling, Daniel Barrell, Laura Clarke, Valery Curwen, Susan Fairley, Julio Fernandez Banet, Konstantinos Billis, Carlos García Girón, Thibaut Hourlier, Kevin Howe, Andreas Kähäri, Felix Kokocinski, Fergal J. Martin, Daniel N. Murphy, Rishi Nag, Magali Ruffier, Michael Schuster, Y. Amy Tang … Stephen M. J. Searle
Database, Volume 2016, 2016, baw093, https://doi.org/10.1093/database/baw093
Published: 23 June 2016
Journal Article

ATtRACT—a database of RNA-binding proteins and associated motifs

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Girolamo Giudice, Fátima Sánchez-Cabo, Carlos Torroja, Enrique Lara-Pezzi
Database, Volume 2016, 2016, baw035, https://doi.org/10.1093/database/baw035
Published: 06 April 2016
Journal Article

SymbioGenomesDB: a database for the integration and access to knowledge on host–symbiont relationships

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Mariana Reyes-Prieto, Carlos Vargas-Chávez, Amparo Latorre, Andrés Moya
Database, Volume 2015, 2015, bav109, https://doi.org/10.1093/database/bav109
Published: 25 November 2015