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Journal Article

PolED: a manually curated database of functional studies of POLE and POLD1 variants reported in humans

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Lev Tsarin, Polina V Shcherbakova
Database, Volume 2025, 2025, baaf076, https://doi.org/10.1093/database/baaf076
Published: 20 November 2025
Journal Article

CobVar—a comprehensive resource of vitamin B12-associated genomic variants

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Neha H Suresh, Chaitra A Kilpady, Akshata A Kamath, Ashikh Ahmed, Tinku Thomas, Anura V Kurpad, Ambily Sivadas
Database, Volume 2025, 2025, baaf049, https://doi.org/10.1093/database/baaf049
Published: 01 October 2025
Journal Article

PLoV: a comprehensive database of genetic variants leading to pregnancy loss

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Evgeniia M Maksiutenko, Igor V Bezdvornykh, Yury A Barbitoff, Yulia A Nasykhova, Andrey S Glotov
Database, Volume 2025, 2025, baaf037, https://doi.org/10.1093/database/baaf037
Published: 08 July 2025
Journal Article

RNA-Chrom: a manually curated analytical database of RNA–chromatin interactome

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G K Ryabykh, S V Kuznetsov, Y D Korostelev, A I Sigorskikh, A A Zharikova, A A Mironov
Database, Volume 2023, 2023, baad025, https://doi.org/10.1093/database/baad025
Published: 24 April 2023
Journal Article

lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs

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Giacomo B Marino, Megan L Wojciechowicz, Daniel J B Clarke, Maxim V Kuleshov, Zhuorui Xie, Minji Jeon, Alexander Lachmann, Avi Ma’ayan
Database, Volume 2023, 2023, baad009, https://doi.org/10.1093/database/baad009
Published: 04 March 2023
Journal Article

Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition

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Davy Weissenbacher, Karen O’Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen Piccolo, Peijin Han … Graciela Gonzalez-Hernandez
Database, Volume 2023, 2023, baac108, https://doi.org/10.1093/database/baac108
Published: 03 February 2023
Journal Article

DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins

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Neha V Kalmankar, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Database, Volume 2022, 2022, baac005, https://doi.org/10.1093/database/baac005
Published: 01 March 2022
Journal Article

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

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Eryk Kropiwnicki, John E Evangelista, Daniel J Stein, Daniel J B Clarke, Alexander Lachmann, Maxim V Kuleshov, Minji Jeon, Kathleen M Jagodnik, Avi Ma’ayan
Database, Volume 2021, 2021, baab017, https://doi.org/10.1093/database/baab017
Published: 31 March 2021
Journal Article

RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes

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V Sureshkumar, Bipratip Dutta, Vishesh Kumar, G Prakash, Dwijesh C Mishra, K K Chaturvedi, Anil Rai, Amitha Mithra Sevanthi, Amolkumar U Solanke
Database, Volume 2019, 2019, baz015, https://doi.org/10.1093/database/baz015
Published: 11 February 2019
Journal Article

Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase

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Phani V Garapati, Jingyao Zhang, Alix J Rey, Steven J Marygold
Database, Volume 2019, 2019, bay144, https://doi.org/10.1093/database/bay144
Published: 23 January 2019
Journal Article

PalmXplore: oil palm gene database

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Nik Shazana Nik Mohd Sanusi, Rozana Rosli, Mohd Amin Ab Halim, Kuang-Lim Chan, Jayanthi Nagappan, Norazah Azizi, Nadzirah Amiruddin, Tatiana V Tatarinova, Eng-Ti Leslie Low
Database, Volume 2018, 2018, bay095, https://doi.org/10.1093/database/bay095
Published: 18 September 2018
Journal Article

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

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Hartmut Foerster, Aureliano Bombarely, James N D Battey, Nicolas Sierro, Nikolai V Ivanov, Lukas A Mueller
Database, Volume 2018, 2018, bay035, https://doi.org/10.1093/database/bay035
Published: 10 May 2018
Journal Article

AllerBase: a comprehensive allergen knowledgebase

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Kiran Kadam, Rajiv Karbhal, V. K. Jayaraman, Sangeeta Sawant, Urmila Kulkarni-Kale
Database, Volume 2017, 2017, bax066, https://doi.org/10.1093/database/bax066
Published: 12 September 2017
Journal Article

MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data

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Max Ruas, V. Guignon, G. Sempere, J. Sardos, Y. Hueber, H. Duvergey, A. Andrieu, R. Chase, C. Jenny, T. Hazekamp, B. Irish, K. Jelali, J. Adeka, T. Ayala-Silva, C.P. Chao, J. Daniells, B. Dowiya, B. Effa effa, L. Gueco … M. Rouard
Database, Volume 2017, 2017, bax046, https://doi.org/10.1093/database/bax046
Published: 11 June 2017
Journal Article

Kalium: a database of potassium channel toxins from scorpion venom

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Alexey I. Kuzmenkov, Nikolay A. Krylov, Anton O. Chugunov, Eugene V. Grishin, Alexander A. Vassilevski
Database, Volume 2016, 2016, baw056, https://doi.org/10.1093/database/baw056
Published: 16 April 2016
Journal Article

ICEPO: the ion channel electrophysiology ontology

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V. Hinard, A. Britan, J.S. Rougier, A. Bairoch, H. Abriel, P. Gaudet
Database, Volume 2016, 2016, baw017, https://doi.org/10.1093/database/baw017
Published: 06 April 2016
Journal Article

Regulators of Androgen Action Resource: a one-stop shop for the comprehensive study of androgen receptor action

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Adam D. DePriest, Michael V. Fiandalo, Simon Schlanger, Frederike Heemers, James L. Mohler, Song Liu, Hannelore V. Heemers
Database, Volume 2016, 2016, bav125, https://doi.org/10.1093/database/bav125
Published: 14 February 2016
Journal Article

ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection

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Gaurav Sablok, G. V. Padma Raju, Suresh B. Mudunuri, Ratna Prabha, Dhananjaya P. Singh, Vesselin Baev, Galina Yahubyan, Peter J. Ralph, Nicola La Porta
Database, Volume 2015, 2015, bav084, https://doi.org/10.1093/database/bav084
Published: 25 September 2015
Journal Article

CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea

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Dadakhalandar Doddamani, Aamir W. Khan, Mohan A. V. S. K Katta, Gaurav Agarwal, Mahendar Thudi, Pradeep Ruperao, David Edwards, Rajeev K. Varshney
Database, Volume 2015, 2015, bav078, https://doi.org/10.1093/database/bav078
Published: 18 August 2015
Journal Article

EpiFactors: a comprehensive database of human epigenetic factors and complexes

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Yulia A. Medvedeva, Andreas Lennartsson, Rezvan Ehsani, Ivan V. Kulakovskiy, Ilya E. Vorontsov, Pouda Panahandeh, Grigory Khimulya, Takeya Kasukawa, The FANTOM Consortium, Finn Drabløs
Database, Volume 2015, 2015, bav067, https://doi.org/10.1093/database/bav067
Published: 07 July 2015