Authors: Anne-Francoise+Adam-Blondon
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Journal Article

NORG - Nitrogen ORGanizer: a novel web-based system for cryopreservation and freezer management

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Marvin Keller, Maximilian Przybilla, Jannik Sehring, Kai Schmid, Thomas Kauer, Felix Dörmer, Nadja Ritschel, Annika May, Hannah Schlierbach, Gudrun Schmidt, Kerstin Leib, Chiana Stephan, Elena Jenike, Carmen Selignow, Angelina Frank, Vincent Umathum, Anne Schänzer, Attila Németh, Keywan Sohrabi … Daniel Amsel
Database, Volume 2026, 2026, baag037, https://doi.org/10.1093/database/baag037
Published: 11 July 2026
Journal Article

Mapping of EFO terms from the GWAS catalog data to multiple ontologies at the Rat Genome Database

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Stanley J F Laulederkind, G T Hayman, Shur-Jen Wang, Carissa A Park, Mary L Kaldunski, Mahima Vedi, Marek A Tutaj, Logan Lamers, Jennifer R Smith, Jeffrey L de Pons, Melinda R Dwinell, Anne E Kwitek
Database, Volume 2026, 2026, baag008, https://doi.org/10.1093/database/baag008
Published: 27 February 2026
Journal Article

A database on the historical and current occurrences of snakes in Eswatini

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Ara Monadjem, Richard C Boycott, Thea Litscha-Koen, Adam Kane, Wisdom M Dlamini, Lindelwa Mmema, Katharine L Strutton, Zakhele Hlophe, Sara Padidar
Database, Volume 2025, 2025, baaf040, https://doi.org/10.1093/database/baaf040
Published: 24 September 2025
Journal Article

StrainInfo—the central database for linked microbial strain identifiers

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Artur Lissin, Isabel Schober, Julius F Witte, Helko Lüken, Adam Podstawka, Julia Koblitz, Boyke Bunk, Peter Dawyndt, Peter Vandamme, Paul de Vos, Jörg Overmann, Lorenz C Reimer
Database, Volume 2025, 2025, baaf059, https://doi.org/10.1093/database/baaf059
Published: 24 September 2025
Journal Article

BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community

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Peter Selby, Rafael Abbeloos, Anne-Francoise Adam-Blondon, Francisco J Agosto-Pérez, Michael Alaux, Isabelle Alic, Khaled Al-Shamaa, Johan Steven Aparicio, Jan Erik Backlund, Aldrin Batac, Sebastian Beier, Gabriel Besombes, Alice Boizet, Matthijs Brouwer, Terry Casstevens, Arnaud Charleroy, Keo Corak, Chaney Courtney, Mariano Crimi … The BrAPI Consortium
Database, Volume 2025, 2025, baaf048, https://doi.org/10.1093/database/baaf048
Published: 24 September 2025
Journal Article

Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database

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Jennifer R Smith, Marek A Tutaj, Jyothi Thota, Logan Lamers, Adam C Gibson, Akhilanand Kundurthi, Varun Reddy Gollapally, Kent C Brodie, Stacy Zacher, Stanley J F Laulederkind, G Thomas Hayman, Shur-Jen Wang, Monika Tutaj, Mary L Kaldunski, Mahima Vedi, Wendy M Demos, Jeffrey L De Pons, Melinda R Dwinell, Anne E Kwitek
Database, Volume 2025, 2025, baae132, https://doi.org/10.1093/database/baae132
Published: 22 January 2025
Journal Article

Interactive tools for functional annotation of bacterial genomes

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Morgan N Price, Adam P Arkin
Database, Volume 2024, 2024, baae089, https://doi.org/10.1093/database/baae089
Published: 06 September 2024
Journal Article

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

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Marija Orlic-Milacic, Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky, Quang Trinh, Marc E Gillespie, Cristoffer Sevilla, Krishna Tiwari, Eliot Ragueneau, Chuqiao Gong, Ralf Stephan, Bruce May, Robin Haw, Joel Weiser, Deidre Beavers, Patrick Conley, Henning Hermjakob … Guanming Wu
Database, Volume 2024, 2024, baae031, https://doi.org/10.1093/database/baae031
Published: 07 May 2024
Journal Article

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

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Jennifer L Clarke, Laurel D Cooper, Monica F Poelchau, Tanya Z Berardini, Justin Elser, Andrew D Farmer, Stephen Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T Nelson, Rie Sadohara, Peter Selby, Anne E Thessen, Brandon Whitehead, Taner Z Sen
Database, Volume 2023, 2023, baad076, https://doi.org/10.1093/database/baad076
Published: 16 November 2023
Journal Article

SyntenyViewer: a comparative genomics-driven translational research tool

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Raphael Flores, Cécile Huneau, Laura Burlot, Mathilde Lainé, Erik Kimmel, Cyril Pommier, Michael Alaux, Anne-Françoise Adam-Blondon, Caroline Pont, Hadi Quesneville, Jerome Salse
Database, Volume 2023, 2023, baad027, https://doi.org/10.1093/database/baad027
Published: 09 May 2023
Journal Article

Acinetobase: the comprehensive database and repository of Acinetobacter strains

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Adam Valcek, James Collier, Alexander Botzki, Charles Van der Henst
Database, Volume 2022, 2022, baac099, https://doi.org/10.1093/database/baac099
Published: 22 November 2022
Journal Article

A roadmap for the functional annotation of protein families: a community perspective

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Valérie de Crécy-lagard, Rocio Amorin de Hegedus, Cecilia Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang … Jin Xu
Database, Volume 2022, 2022, baac062, https://doi.org/10.1093/database/baac062
Published: 12 August 2022
Journal Article

A Simple Standard for Sharing Ontological Mappings (SSSOM)

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Nicolas Matentzoglu, James P Balhoff, Susan M Bello, Chris Bizon, Matthew Brush, Tiffany J Callahan, Christopher G Chute, William D Duncan, Chris T Evelo, Davera Gabriel, John Graybeal, Alasdair Gray, Benjamin M Gyori, Melissa Haendel, Henriette Harmse, Nomi L Harris, Ian Harrow, Harshad B Hegde, Amelia L Hoyt … Christopher J Mungall
Database, Volume 2022, 2022, baac035, https://doi.org/10.1093/database/baac035
Published: 25 May 2022
Journal Article

SwissBioPics—an interactive library of cell images for the visualization of subcellular location data

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Philippe Le Mercier, Jerven Bolleman, Edouard de Castro, Elisabeth Gasteiger, Parit Bansal, Andrea H Auchincloss, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Anne Estreicher, Marc Feuermann, Damien Lieberherr, Catherine Rivoire, Ivo Pedruzzi, Nicole Redaschi, Alan Bridge
Database, Volume 2022, 2022, baac026, https://doi.org/10.1093/database/baac026
Published: 12 April 2022
Journal Article

Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase

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Adam J Wright, Marija Orlic-Milacic, Karen Rothfels, Joel Weiser, Quang M Trinh, Bijay Jassal, Robin A Haw, Lincoln D Stein
Database, Volume 2022, 2022, baac009, https://doi.org/10.1093/database/baac009
Published: 06 March 2022
Journal Article

The World Spider Trait database: a centralized global open repository for curated data on spider traits

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Stano Pekár, Jonas O Wolff, Ľudmila Černecká, Klaus Birkhofer, Stefano Mammola, Elizabeth C Lowe, Caroline S Fukushima, Marie E Herberstein, Adam Kučera, Bruno A Buzatto, El Aziz Djoudi, Marc Domenech, Alison Vanesa Enciso, Yolanda M G Piñanez Espejo, Sara Febles, Luis F García, Thiago Gonçalves-Souza, Marco Isaia, Denis Lafage … Pedro Cardoso
Database, Volume 2021, 2021, baab064, https://doi.org/10.1093/database/baab064
Published: 20 October 2021
Journal Article

A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data

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Lacey-Anne Sanderson, Carolyn T Caron, Reynold L Tan, Kirstin E Bett
Database, Volume 2021, 2021, baab051, https://doi.org/10.1093/database/baab051
Published: 14 August 2021
Journal Article

COVIDOUTCOME—estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome

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Ádám Nagy, Balázs Ligeti, János Szebeni, Sándor Pongor, Balázs Győrffy
Database, Volume 2021, 2021, baab020, https://doi.org/10.1093/database/baab020
Published: 26 June 2021
Journal Article

Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition

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Adam Klie, Brian Y Tsui, Shamim Mollah, Dylan Skola, Michelle Dow, Chun-Nan Hsu, Hannah Carter
Database, Volume 2021, 2021, baab021, https://doi.org/10.1093/database/baab021
Published: 29 April 2021
Journal Article

The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research

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Lauren Chan, Nicole Vasilevsky, Anne Thessen, Julie McMurry, Melissa Haendel
Database, Volume 2021, 2021, baab003, https://doi.org/10.1093/database/baab003
Published: 25 January 2021