Authors: Andrew Chatr-Aryamontri
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Journal Article

Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII

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Andrew Chatr-aryamontri, Lynette Hirschman, Karen E Ross, Rose Oughtred, Martin Krallinger, Kara Dolinski, Mike Tyers, Tonia Korves, Cecilia N Arighi
Database, Volume 2022, 2022, baac084, https://doi.org/10.1093/database/baac084
Published: 05 October 2022
Journal Article

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

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Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altınel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang … Zhiyong Lu
Database, Volume 2019, 2019, bay147, https://doi.org/10.1093/database/bay147
Published: 28 January 2019
Journal Article

The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions

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Rezarta Islamaj Doğan, Sun Kim, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, W. John Wilbur, Donald C. Comeau, Kara Dolinski, Mike Tyers
Database, Volume 2017, 2017, baw147, https://doi.org/10.1093/database/baw147
Published: 10 January 2017
Journal Article

Overview of the interactive task in BioCreative V

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Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios Gkoutos, Afroza K. Irin, Lars J. Jensen … Cecilia N. Arighi
Database, Volume 2016, 2016, baw119, https://doi.org/10.1093/database/baw119
Published: 01 September 2016
Journal Article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

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Sun Kim, Rezarta Islamaj Doğan, Andrew Chatr-Aryamontri, Christie S. Chang, Rose Oughtred, Jennifer Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su … Donald C. Comeau
Database, Volume 2016, 2016, baw121, https://doi.org/10.1093/database/baw121
Published: 01 September 2016
Journal Article

Assisting manual literature curation for protein–protein interactions using BioQRator

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Dongseop Kwon, Sun Kim, Soo-Yong Shin, Andrew Chatr-aryamontri, W. John Wilbur
Database, Volume 2014, 2014, bau067, https://doi.org/10.1093/database/bau067
Published: 21 July 2014
Journal Article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

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Cecilia N. Arighi, Ben Carterette, K. Bretonnel Cohen, Martin Krallinger, W. John Wilbur, Petra Fey, Robert Dodson, Laurel Cooper, Ceri E. Van Slyke, Wasila Dahdul, Paula Mabee, Donghui Li, Bethany Harris, Marc Gillespie, Silvia Jimenez, Phoebe Roberts, Lisa Matthews, Kevin Becker, Harold Drabkin … Cathy Wu
Database, Volume 2013, 2013, bas056, https://doi.org/10.1093/database/bas056
Published: 16 January 2013
Journal Article

Text mining for the biocuration workflow

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Lynette Hirschman, Gully A. P. C Burns, Martin Krallinger, Cecilia Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-Aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert Nash, Anne-Lise Veuthey, Thomas Wiegers, Andrew G. Winter
Database, Volume 2012, 2012, bas020, https://doi.org/10.1093/database/bas020
Published: 18 April 2012
Journal Article

How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience

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Martin Krallinger, Florian Leitner, Miguel Vazquez, David Salgado, Christophe Marcelle, Mike Tyers, Alfonso Valencia, Andrew Chatr-aryamontri
Database, Volume 2012, 2012, bas017, https://doi.org/10.1093/database/bas017
Published: 21 March 2012