Authors: Alfonso Valencia
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Journal Article

Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations

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Antonio Miranda-Escalada, Farrokh Mehryary, Jouni Luoma, Darryl Estrada-Zavala, Luis Gasco, Sampo Pyysalo, Alfonso Valencia, Martin Krallinger
Database, Volume 2023, 2023, baad080, https://doi.org/10.1093/database/baad080
Published: 28 November 2023
Journal Article

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge

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Martin Pérez-Pérez, Gael Pérez-Rodríguez, Obdulia Rabal, Miguel Vazquez, Julen Oyarzabal, Florentino Fdez-Riverola, Alfonso Valencia, Martin Krallinger, Anália Lourenço
Database, Volume 2016, 2016, baw120, https://doi.org/10.1093/database/baw120
Published: 19 August 2016
Journal Article

BioCreative-IV virtual issue

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Cecilia N. Arighi, Cathy H. Wu, Kevin B. Cohen, Lynette Hirschman, Martin Krallinger, Alfonso Valencia, Zhiyong Lu, John W. Wilbur, Thomas C. Wiegers
Database, Volume 2014, 2014, bau039, https://doi.org/10.1093/database/bau039
Published: 22 May 2014
Journal Article

BioC: a minimalist approach to interoperability for biomedical text processing

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Donald C. Comeau, Rezarta Islamaj Doğan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
Database, Volume 2013, 2013, bat064, https://doi.org/10.1093/database/bat064
Published: 18 September 2013
Journal Article

BioCreative-2012 Virtual Issue

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Cathy H. Wu, Cecilia N. Arighi, Kevin B. Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
Database, Volume 2012, 2012, bas049, https://doi.org/10.1093/database/bas049
Published: 05 December 2012
Journal Article

Text mining for the biocuration workflow

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Lynette Hirschman, Gully A. P. C Burns, Martin Krallinger, Cecilia Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-Aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert Nash, Anne-Lise Veuthey, Thomas Wiegers, Andrew G. Winter
Database, Volume 2012, 2012, bas020, https://doi.org/10.1093/database/bas020
Published: 18 April 2012
Journal Article

How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience

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Martin Krallinger, Florian Leitner, Miguel Vazquez, David Salgado, Christophe Marcelle, Mike Tyers, Alfonso Valencia, Andrew Chatr-aryamontri
Database, Volume 2012, 2012, bas017, https://doi.org/10.1093/database/bas017
Published: 21 March 2012