Authors: Alex Bateman
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Journal Article

LitSumm: large language models for literature summarization of noncoding RNAs

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Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I Petrov, Alex Bateman, Blake Sweeney
Database, Volume 2025, 2025, baaf006, https://doi.org/10.1093/database/baaf006
Published: 05 February 2025
Journal Article

A roadmap for the functional annotation of protein families: a community perspective

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Valérie de Crécy-lagard, Rocio Amorin de Hegedus, Cecilia Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J Bridge, Stephen K Burley, Stacey Cleveland, Lucy J Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang … Jin Xu
Database, Volume 2022, 2022, baac062, https://doi.org/10.1093/database/baac062
Published: 12 August 2022
Journal Article

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

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Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Isberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan … Gerrit Vriend
Database, Volume 2015, 2015, bav063, https://doi.org/10.1093/database/bav063
Published: 11 July 2015
Journal Article

DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration

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Pascale Gaudet, Monica Munoz-Torres, Marc Robinson-Rechavi, Teresa Attwood, Alex Bateman, J. Michael Cherry, Renate Kania, Claire O'Donovan, Chisato Yamasaki
Database, Volume 2013, 2013, bat077, https://doi.org/10.1093/database/bat077
Published: 06 December 2013
Journal Article

The challenge of increasing Pfam coverage of the human proteome

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Jaina Mistry, Penny Coggill, Ruth Y. Eberhardt, Antonio Deiana, Andrea Giansanti, Robert D. Finn, Alex Bateman, Marco Punta
Database, Volume 2013, 2013, bat040, https://doi.org/10.1093/database/bat040
Published: 31 May 2013
Journal Article

The challenge of increasing Pfam coverage of the human proteome

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Jaina Mistry, Penny Coggill, Ruth Y. Eberhardt, Antonio Deiana, Andrea Giansanti, Robert D. Finn, Alex Bateman, Marco Punta
Database, Volume 2013, 2013, bat023, https://doi.org/10.1093/database/bat023
Published: 19 April 2013
Journal Article

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference

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Pascale Gaudet, Cecilia Arighi, Frederic Bastian, Alex Bateman, Judith A. Blake, Michael J. Cherry, Peter D’Eustachio, Robert Finn, Michelle Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica Munoz-Torres, Darren Natale, Claire O’Donovan, Francis Ouellette, Kim D. Pruitt … Raja Mazumder
Database, Volume 2012, 2012, bas036, https://doi.org/10.1093/database/bas036
Published: 29 October 2012
Journal Article

AntiFam: a tool to help identify spurious ORFs in protein annotation

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Ruth Y. Eberhardt, Daniel H. Haft, Marco Punta, Maria Martin, Claire O'Donovan, Alex Bateman
Database, Volume 2012, 2012, bas003, https://doi.org/10.1093/database/bas003
Published: 13 March 2012
Journal Article

Biocurators and Biocuration: surveying the 21st century challenges

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Sarah Burge, Teresa K. Attwood, Alex Bateman, Tanya Z. Berardini, Michael Cherry, Claire O'Donovan, loannis Xenarios, Pascale Gaudet
Database, Volume 2012, 2012, bar059, https://doi.org/10.1093/database/bar059
Published: 13 February 2012
Journal Article

Towards BioDBcore: a community-defined information specification for biological databases

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Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock … on behalf of the BioDBCore working group
Database, Volume 2011, 2011, baq027, https://doi.org/10.1093/database/baq027
Published: 04 January 2011