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Volume 2026, 2026
Original Articles
ePerturbDB: enhancer’s experimental perturbation database
Samiksha Maurya, Jaidev Sharma, Amit Mandoli, Vibhor Kumar
Database, Volume 2026, 2026, baaf084, https://doi.org/10.1093/database/baaf084
GdbMTB: a manually curated genomic database of magnetotactic bacteria
Runjia Ji, Yongxin Pan, Wei Lin
Database, Volume 2026, 2026, baaf090, https://doi.org/10.1093/database/baaf090
Panorama: a database for the oncogenic evaluation of somatic mutations in pan-cancer
Seung-Jin Park, Seon-Young Kim
Database, Volume 2026, 2026, baaf086, https://doi.org/10.1093/database/baaf086
Tear fluid database: a reference website for tear fluid proteomics
Drew Mayernik, Saleh Ahmed, Eliza Williams, Tae Jin Lee, Amy Estes, Pamela Martin, Wenbo Zhi, Vishal Jhanji, Shruti Sharma, Ashok Sharma
Database, Volume 2026, 2026, baaf091, https://doi.org/10.1093/database/baaf091
A comprehensive morphological database of hognose Porthidium pitvipers (Viperidae: Crotalinae)
Carlos Patron-Rivero, Carlos Yañez-Arenas, Sara Ruane, Xavier Chiappa-Carrara, Octavio R Rojas-Soto
Database, Volume 2026, 2026, baaf085, https://doi.org/10.1093/database/baaf085
A comprehensive database for biological data derived from sewage in five European cities
Ágnes Becsei, Patrick Munk, Alessandro Fuschi, Saria Otani, József Stéger, Dávid Visontai, Krisztián Papp, Christian Brinch, Ravi Kant, Ilya Weinstein, Olli Vapalahti, Miranda de Graaf, Claudia M E Schapendonk, Jeroen Roelfsema, Maaike van den Beld, Roan Pijnacker, Eelco Franz, Patricia Alba, Antonio Battisti …
Frank M Aarestrup
Database, Volume 2026, 2026, baaf089, https://doi.org/10.1093/database/baaf089
CysDuF database: annotation and characterization of cysteine residues in domain of unknown function proteins based on cysteine post-translational modifications, their protein microenvironments, biochemical pathways, taxonomy, and diseases
Devarakonda Himaja, Debashree Bandyopadhyay
Database, Volume 2026, 2026, baag002, https://doi.org/10.1093/database/baag002
Epilepsy disease classification: a community effort to enhance the Mondo Disease Ontology
Nicole Vasilevsky, Sarah Gehrke, Kathleen Mullen, Subit Barua, Ian Braun, Tobias Brünger, Curtis Coughlin, II, Alina Ivaniuk, Daniel Korn, Dennis Lal, Stephanie Marsh, Elaine O’Loughlin, Daniel Olson, Yousif Shwetar, Christalena Sofocleous, Vanessa Vogel-Farley, Heidi Grabenstatter, Melissa Haendel, Christopher Mungall, Sabrina Toro
Database, Volume 2026, 2026, baag004, https://doi.org/10.1093/database/baag004
huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases
Meiling Zheng, Bao Qian, Zhi Hu, Xingyu Wei, Ke Sun, Wenjuan Jiang, Changxing Gao, Ming Zhao
Database, Volume 2026, 2026, baag009, https://doi.org/10.1093/database/baag009
Mapping of EFO terms from the GWAS catalog data to multiple ontologies at the Rat Genome Database
Stanley J F Laulederkind, G T Hayman, Shur-Jen Wang, Carissa A Park, Mary L Kaldunski, Mahima Vedi, Marek A Tutaj, Logan Lamers, Jennifer R Smith, Jeffrey L de Pons, Melinda R Dwinell, Anne E Kwitek
Database, Volume 2026, 2026, baag008, https://doi.org/10.1093/database/baag008
BEDB: a comprehensive binding energy database for molecular docking and dynamics: insights into Human Metapneumovirus (HMPV) Inhibitors
Farhan Ullah, Wajeeha Rahman, Anees Ullah, Riffat Jehan, Ali Raza, Shamsher Khan, Zarmeena, Shahid Ullah, Tianshun Gao
Database, Volume 2026, 2026, baag011, https://doi.org/10.1093/database/baag011
The Portuguese Beacon: sharing genomic variant data safely
Jorge S Oliveira, Sara Sant’Ana, Miguel Santos, Daniel Faria
Database, Volume 2026, 2026, baag012, https://doi.org/10.1093/database/baag012
PaVarDB: a database and web platform for missense variant analysis in Pseudomonas aeruginosa using an end-to-end BVbase pipeline
Virudhagiri Elamurugan, Subbiah Thamotharan, Vigneshwar Ramakrishnan
Database, Volume 2026, 2026, baag014, https://doi.org/10.1093/database/baag014
BDCD: a comprehensive Brain Disease Cell-cell communication Database
Xinyi Liu, Citu Citu, Gang Qu, Wendao Liu, Nitesh Enduru, Andi Liu, Chia-Hao Tung, Zhongming Zhao
Database, Volume 2026, 2026, baag017, https://doi.org/10.1093/database/baag017
Dataset of xenobiotics human renal clearance values
Natalia Łapińska, Sebastian Polak
Database, Volume 2026, 2026, baag018, https://doi.org/10.1093/database/baag018
TCMToxDB: a comprehensive database for the toxicological analysis of traditional Chinese medicines
Yongzheng Zhu, Laihao Fang, Yunbo Miao, Longfei Ma, Rong Sun, Yimin Mao, Wei Guo, Jun Wang, Guoxian Yu
Database, Volume 2026, 2026, baag019, https://doi.org/10.1093/database/baag019
Desert Plant Endophyte Genome Database: a curated repository of endophytic bacterial genomes across arid ecosystems
Sabiha Parween, Arun Prasanna Nagarajan, Amal K Alghamdi, Abdul Aziz Eida, Feras F Lafi, Luma Albanna, Nida Salem, Barakat Abu-Irmaileh, Zaid A Pirzada, Shahid Siddique, Ruben Garrido-Oter, Paul Schulze-Lefert, Maged M Saad, Heribert Hirt
Database, Volume 2026, 2026, baag020, https://doi.org/10.1093/database/baag020
MOKCa-3D database: functional and structural analysis of missense mutations in cancer
Biniam Haile, Adnan Cinar, Sayeda F Banini, Katrin Zhivkova, Finn J Gallagher, Christopher J Richardson, Frances M G Pearl
Database, Volume 2026, 2026, baag001, https://doi.org/10.1093/database/baag001
CysDBase: a comprehensive database of cysteine post-translational modifications across protein sequence, structure, microenvironment, class, cellular localization, biological pathway, and taxonomy
Devarakonda Himaja, Debashree Bandyopadhyay
Database, Volume 2026, 2026, baag021, https://doi.org/10.1093/database/baag021
FuNGI: Fungal Nucleolar Genomic Inventory—a comprehensive database of fungal proteins with predicted nucleolar localization signals
Gnanendra Shanmugam, Chaewon Kim, Surajit De Mandal, Minji Kim, Song Hee Lee, Jaeyoung Choi, Junhyun Jeon
Database, Volume 2026, 2026, baag023, https://doi.org/10.1093/database/baag023
TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers
Yun Zhang, Jianqi She, Xueyan Hu, Yueqi Jin, Changyu Tao, Minghao Du, Ence Yang
Database, Volume 2026, 2026, baag025, https://doi.org/10.1093/database/baag025
MetaCancerDB: a database of site-specific RNA–miRNA correlations in cancer metastasis
Myeonghun Cho, Byungkyu Park, Kyungsook Han
Database, Volume 2026, 2026, baag026, https://doi.org/10.1093/database/baag026
Large-scale manual curation and harmonization of metadata from metagenomic and cancer genomic repositories: challenges and solutions
Kaelyn Long, Kai Gravel-Pucillo, Levi Waldron, Sean Davis, Sehyun Oh
Database, Volume 2026, 2026, baag027, https://doi.org/10.1093/database/baag027
Quantitative analysis of growth and diversification in venom data using database metrics
Kim N Kirchhoff, Tobias Senoner, Selin Tuerkoglu, Ivan Koludarov, Björn M von Reumont, Mandë Holford
Database, Volume 2026, 2026, baag032, https://doi.org/10.1093/database/baag032
Rosetta Statements: simplifying FAIR knowledge graph construction with a user-centred approach
Lars Vogt, Kheir Eddine Farfar, Pallavi Karanth, Marcel Konrad, Allard Oelen, Manuel Prinz, Philip Strömert
Database, Volume 2026, 2026, baag030, https://doi.org/10.1093/database/baag030
A similarity metric, rubric, and unified hierarchy for biomedical publication types and study designs
Neil R Smalheiser, Joe D Menke, Arthur W Holt
Database, Volume 2026, 2026, baag022, https://doi.org/10.1093/database/baag022
PhaLP 2.0: extending the community-oriented phage lysin database with a SUBLYME pipeline for metagenomic discovery
Alexandre Boulay, Victor Németh, Bjorn Criel, Michiel Stock, Bernard De Baets, Clovis Galiez, Elsa Rousseau, Yves Briers, Roberto Vázquez
Database, Volume 2026, 2026, baag033, https://doi.org/10.1093/database/baag033
Development of CypriSSR: a genome-wide, chromosome-level microsatellite database for multiple cyprinidae species
Princy Saini, Mir Asif Iquebal, Sarika Jaiswal, Ulavappa B Angadi
Database, Volume 2026, 2026, baag035, https://doi.org/10.1093/database/baag035
GIDISdb: a gene expression database for exploring human immune responses in infectious diseases
Yu Liao, Zhen-Lin Tan, Wen-Kang Shen, Wei Li, Qian Lei, An-Yuan Guo
Database, Volume 2026, 2026, baag036, https://doi.org/10.1093/database/baag036
IBDkb: an AI-enhanced integrative knowledge base for inflammatory bowel disease research and drug discovery
Liwen Tao, Shiqing Shi, Ruixin Zhu, Zhuo Liu, Bin Yang, Lei Liu, Wanning Chen, Qian Long, Na Jiao, Guoqing Zhang, Pingping Xu, Dingfeng Wu
Database, Volume 2026, 2026, baag038, https://doi.org/10.1093/database/baag038
NORG - Nitrogen ORGanizer: a novel web-based system for cryopreservation and freezer management
Marvin Keller, Maximilian Przybilla, Jannik Sehring, Kai Schmid, Thomas Kauer, Felix Dörmer, Nadja Ritschel, Annika May, Hannah Schlierbach, Gudrun Schmidt, Kerstin Leib, Chiana Stephan, Elena Jenike, Carmen Selignow, Angelina Frank, Vincent Umathum, Anne Schänzer, Attila Németh, Keywan Sohrabi …
Daniel Amsel
Database, Volume 2026, 2026, baag037, https://doi.org/10.1093/database/baag037
Application of large language models to the annotation of cell lines and mouse strains in genomics data
Sanja Rogic, B Ogan Mancarci, Brianna Xu, Anna Xiao, Carlton Yan, Paul Pavlidis
Database, Volume 2026, 2026, baag041, https://doi.org/10.1093/database/baag041
OzButterflies – a high quality open database of multispectral images and spectra of tropical to temperate Australian butterflies
Marilia Fernandes Erickson, Hansani S S Daluwatta Galappaththige, Donald James Mclean, Diogo Jackson de Aquino Silva, Mariel Fulham, Zoe Wild, Michael B J Kelly, Christopher J Irving, Daniele Carlesso, Georgina E Binns, Sanni A Silvasti, Liisa Hämäläinen, Louis G O’Neill, Kiara L’Herpiniere, Johanna Mappes, David W Kikuchi, Hannah M Rowland, Michelle Power, Thomas E White …
Marie E Herberstein
Database, Volume 2026, 2026, baag040, https://doi.org/10.1093/database/baag040
TogoMCP: natural language querying of life-science knowledge graphs via schema-guided LLMs and the Model Context Protocol
Akira R Kinjo, Yasunori Yamamoto, Samuel Bustamante-Larriet, Jose-Emilio Labra-Gayo, Takatomo Fujisawa
Database, Volume 2026, 2026, baag042, https://doi.org/10.1093/database/baag042
Database tools
H-SPAR DB: human spaceflight platform for analysis and research—an integrative omics database for space health
Marios Tomazou, Marilena M Bourdakou, Eleni Nicolaidou, Grigoris Georgiou, Kyriaki Savva, Efi Athieniti, Styliana Menelaou, Sotiroula Afxenti, George M Spyrou
Database, Volume 2026, 2026, baaf083, https://doi.org/10.1093/database/baaf083
SynVectorDB: embedding-based retrieval system for synthetic biology parts
Hao Li, Jiani Hu, Jie Song, Wei Zhou
Database, Volume 2026, 2026, baaf088, https://doi.org/10.1093/database/baaf088
predicTox: an integrated database of clinical risk frequencies and human gene expression signatures for cardiotoxic drugs
Jens Hansen, Pedro Martinez, Arjun S Yadaw, Yuguang Xiong, Rebecca Racz, Michael R Pacanowski, Laura L Hopkins, Nicholas M P King, Darrell Abernethy, Eric Sobie, Ravi Iyengar
Database, Volume 2026, 2026, baag003, https://doi.org/10.1093/database/baag003
ProteoformDB: an integrative database for functional roles of proteoforms
Hanwen Luo, Sichao Qiu, Maozu Guo, Beibei Xin, Jun Wang, Guoxian Yu
Database, Volume 2026, 2026, baag005, https://doi.org/10.1093/database/baag005
neomerDB: a comprehensive database of neomer biomarkers in cancer
Kimonas Provatas, Candace S Y Chan, Ioannis Kerasiotis, Eleftherios Bochalis, Akshatha Nayak, Brad E Zacharia, Georgios A Pavlopoulos, Wei Li, Ilias Georgakopoulos-Soares
Database, Volume 2026, 2026, baag006, https://doi.org/10.1093/database/baag006
scDrugAtlas: an integrative single-cell drug response database for dissecting tumour heterogeneity in therapeutic efficacy
Yanfei Wu, Wei Huang, Xinda Ren, Hui Liu, Ling Xu
Database, Volume 2026, 2026, baag010, https://doi.org/10.1093/database/baag010
IsoProDB: an integrated map of human protein isoforms for accelerated research
Sreelakshmi Pathappillil Soman, Samseera Ummar, Muktar Ahmed, Prathik Basthikoppa Shivamurthy, Sourav Sreelan, Poornima Ramesh, Mahammad Nisar, Yashwanth Subbannayya, Rajesh Raju
Database, Volume 2026, 2026, baag015, https://doi.org/10.1093/database/baag015
MASH-GA: a manually curated cross-species transcriptomic database for metabolic-associated steatohepatitis
Yong Wang, Ke Ding, Beicheng Sun, Qingxiang Xu, Weiting Zheng, Lei Liu, Jian Wang, Kanghui Liu, Jinyao Zhang, Wenjie Zhang
Database, Volume 2026, 2026, baag013, https://doi.org/10.1093/database/baag013
VarStack2—an interactive web tool for somatic variant interpretation in cancer
Nitin Sreekumar, Benjamin J Ahn, Shulan Tian, Alper Uzun, Ece D Gamsiz Uzun
Database, Volume 2026, 2026, baag016, https://doi.org/10.1093/database/baag016
FAD: a comprehensive database merging information about food allergens
Wafa Mokhtari, Souad Khemili-Talbi, Jean Kwasigroch, Dimitri Gilis
Database, Volume 2026, 2026, baag028, https://doi.org/10.1093/database/baag028
GUTAID: a curated database linking gut microbial antigens to autoimmune mechanisms
Laibah Hashmi, Shoaib Ur Rehman, Farzana Jabeen, Masood Ur Rehman Kayani
Database, Volume 2026, 2026, baag029, https://doi.org/10.1093/database/baag029
Database update
KitBase Expanded: An Integrated Genomic and Phenotypic Resource for 3,268 Fast-Neutron-Irradiated Rice Mutants
Artur Teixeira de Araujo, Jr, Rashmi Jain, Deling Ruan, Mawsheng Chern, Nguyen Ho, Rohan Bhushan Jhingan, Guotian Li, Phat Q Duong, Maria Florencia Ercoli, Pamela C Ronald
Database, Volume 2026, 2026, baag024, https://doi.org/10.1093/database/baag024
Review
Goals and strategies for the indexing of publication types and study designs
Neil R Smalheiser, Joe D Menke, Arthur W Holt, Halil Kilicoglu, Jodi Schneider
Database, Volume 2026, 2026, baag039, https://doi.org/10.1093/database/baag039
Technical Report
The Sickle Africa Data Coordinating Centre (SADaCC): a data science hub for interdisciplinary sickle cell disease research and training
Ambroise Wonkam, Nchangwi Syntia Munung, Mario Jonas, Wilson Mupfurirwa, Arthemon Nguweneza, Kevin Esoh, Chandre Oosterwyk-Liu, Zimkita Magangana, Khuthala Mnika, Valentina Ngo Bitoungui, Martha Kamkuemah, Kambe Banda, Nabeelah Samie, Jade Hotchkis, Victoria Nembaware, Andre-Pascal Kengne, Nicola Mulder
Database, Volume 2026, 2026, baag007, https://doi.org/10.1093/database/baag007
Correction
Correction to: neomerDB: a comprehensive database of neomer biomarkers in cancer
Database, Volume 2026, 2026, baag043, https://doi.org/10.1093/database/baag043
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