Dena Salehipour, Kirsten M Farncombe, Veronica Andric, Safa Ansar, Sean Delong, Eric Li, Samantha Macpherson, Sarah Ridd, Deborah I Ritter, Courtney Thaxton, Raymond H Kim

Database, Volume 2023, 2023, baac109, https://doi.org/10.1093/database/baac109

ENCD: a manually curated database of experimentally supported endocrine system disease and lncRNA associations

Ming Hao, Yue Qi, Rongji Xu, Kangqi Zhao, Mingqing Li, Yongyan Shan, Tian Xia, Kun Yang, Wuyang Hasi, Cong Zhang, Daowei Li, Yi Wang, Peng Wang, Hongyu Kuang

Database, Volume 2023, 2023, baac113, https://doi.org/10.1093/database/baac113

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Automatic Extraction of Medication Mentions from Tweets—Overview of the BioCreative VII Shared Task 3 Competition

Davy Weissenbacher, Karen O’Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen Piccolo, Peijin Han … Graciela Gonzalez-Hernandez

Database, Volume 2023, 2023, baac108, https://doi.org/10.1093/database/baac108

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SalivaDB—a comprehensive database for salivary biomarkers in humans

Akanksha Arora, Dashleen Kaur, Sumeet Patiyal, Dilraj Kaur, Ritu Tomer, Gajendra P S Raghava

Database, Volume 2023, 2023, baad002, https://doi.org/10.1093/database/baad002

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Coronavirus Immunotherapeutic Consortium Database

Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L Schendel, Haoyang Li, Kathryn M Hastie, S Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E Munt, Mary Osei-Twum, Caroline Atyeo, James A Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima … Bjoern Peters

Database, Volume 2023, 2023, baac112, https://doi.org/10.1093/database/baac112

Standardized naming of microbiome samples in Genomes OnLine Database

Supratim Mukherjee, Galina Ovchinnikova, Dimitri Stamatis, Cindy Tianqing Li, I-Min A Chen, Nikos C Kyrpides, T B K Reddy

Database, Volume 2023, 2023, baad001, https://doi.org/10.1093/database/baad001

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FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes

Muhammad Rashid, Muhammad Omar, Tapan Kumar Mohanta

Database, Volume 2023, 2023, baad004, https://doi.org/10.1093/database/baad004

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Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII

Robert Leaman, Rezarta Islamaj, Virginia Adams, Mohammed A Alliheedi, João Rafael Almeida, Rui Antunes, Robert Bevan, Yung-Chun Chang, Arslan Erdengasileng, Matthew Hodgskiss, Ryuki Ida, Hyunjae Kim, Keqiao Li, Robert E Mercer, Lukrécia Mertová, Ghadeer Mobasher, Hoo-Chang Shin, Mujeen Sung, Tomoki Tsujimura … Zhiyong Lu

Database, Volume 2023, 2023, baad005, https://doi.org/10.1093/database/baad005

Assessing resource use: a case study with the Human Disease Ontology

J. Allen Baron, Lynn M Schriml

Database, Volume 2023, 2023, baad007, https://doi.org/10.1093/database/baad007

AIMedGraph: a comprehensive multi-relational knowledge graph for precision medicine

Xueping Quan, Weijing Cai, Chenghang Xi, Chunxiao Wang, Linghua Yan

Database, Volume 2023, 2023, baad006, https://doi.org/10.1093/database/baad006

lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs

Giacomo B Marino, Megan L Wojciechowicz, Daniel J B Clarke, Maxim V Kuleshov, Zhuorui Xie, Minji Jeon, Alexander Lachmann, Avi Ma’ayan

Database, Volume 2023, 2023, baad009, https://doi.org/10.1093/database/baad009

dbAQP-SNP: a database of missense single-nucleotide polymorphisms in human aquaporins

Rachana Dande, Ramasubbu Sankararamakrishnan

Database, Volume 2023, 2023, baad012, https://doi.org/10.1093/database/baad012

AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold

Jimin Pei, Qian Cong

Database, Volume 2023, 2023, baad008, https://doi.org/10.1093/database/baad008

A review of the International Seabed Authority database DeepData from a biological perspective: challenges and opportunities in the UN Ocean Decade

M Rabone, T Horton, D O B Jones, E Simon-Lledó, A G Glover

Database, Volume 2023, 2023, baad013, https://doi.org/10.1093/database/baad013

NbThermo: a new thermostability database for nanobodies

Mario S Valdés-Tresanco, Mario E Valdés-Tresanco, Esteban Molina-Abad, Ernesto Moreno

Database, Volume 2023, 2023, baad021, https://doi.org/10.1093/database/baad021

CARD*Shark: automated prioritization of literature curation for the Comprehensive Antibiotic Resistance Database

Arman Edalatmand, Andrew G McArthur

Database, Volume 2023, 2023, baad023, https://doi.org/10.1093/database/baad023

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A combinatorial approach implementing new database structures to facilitate practical data curation management of QTL, association, correlation and heritability data on trait variants

Zhi-Liang Hu, Carissa A Park, James M Reecy

Database, Volume 2023, 2023, baad024, https://doi.org/10.1093/database/baad024

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MBS: a genome browser annotation track for high-confident microRNA binding sites in whole human transcriptome

Walter Arancio, Nicolina Sciaraffa, Claudia Coronnello

Database, Volume 2023, 2023, baad015, https://doi.org/10.1093/database/baad015

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OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology

Angela L Riffo-Campos, Juan Domingo, Esther Dura

Database, Volume 2023, 2023, baad029, https://doi.org/10.1093/database/baad029

TRSRD: a database for research on risky substances in tea using natural language processing and knowledge graph-based techniques

Yongmei Wang, Peng Wang, Yongheng Zhang, Siyi Yao, Zhipeng Xu, Youhua Zhang

Database, Volume 2023, 2023, baad031, https://doi.org/10.1093/database/baad031

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CaviDB: a database of cavities and their features in the structural and conformational space of proteins

Ana Julia Velez Rueda, Franco Leonardo Bulgarelli, Nicolás Palopoli, Gustavo Parisi

Database, Volume 2023, 2023, baad010, https://doi.org/10.1093/database/baad010

PYK-SubstitutionOME: an integrated database containing allosteric coupling, ligand affinity and mutational, structural, pathological, bioinformatic and computational information about pyruvate kinase isozymes

Liskin Swint-Kruse, Larissa L Dougherty, Braelyn Page, Tiffany Wu, Pierce T O’Neil, Charulata B Prasannan, Cody Timmons, Qingling Tang, Daniel J Parente, Shwetha Sreenivasan, Todd Holyoak, Aron W Fenton

Database, Volume 2023, 2023, baad030, https://doi.org/10.1093/database/baad030

SmartWoodID—an image collection of large end-grain surfaces to support wood identification systems

Ruben De Blaere, Kévin Lievens, Dieter Van Hassel, Victor Deklerck, Tom De Mil, Wannes Hubau, Joris Van Acker, Nils Bourland, Jan Verwaeren, Jan Van den Bulcke, Hans Beeckman

Database, Volume 2023, 2023, baad034, https://doi.org/10.1093/database/baad034

IHM-DB: a curated collection of metagenomics data from the Indian Himalayan Region, and automated pipeline for 16S rRNA amplicon-based analysis (AutoQii2)

Abhishek Khatri, Aman Thakur, Ayush Lepcha, Vishal Acharya, Rakshak Kumar

Database, Volume 2023, 2023, baad039, https://doi.org/10.1093/database/baad039

PLBD: protein–ligand binding database of thermodynamic and kinetic intrinsic parameters

Darius Lingė, Marius Gedgaudas, Andrius Merkys, Vytautas Petrauskas, Antanas Vaitkus, Algirdas Grybauskas, Vaida Paketurytė, Asta Zubrienė, Audrius Zakšauskas, Aurelija Mickevičiūtė, Joana Smirnovienė, Lina Baranauskienė, Edita Čapkauskaitė, Virginija Dudutienė, Ernestas Urniežius, Aleksandras Konovalovas, Egidijus Kazlauskas, Kirill Shubin, Helgi B Schiöth … Daumantas Matulis

Database, Volume 2023, 2023, baad040, https://doi.org/10.1093/database/baad040

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Neodb: a comprehensive neoantigen database and discovery platform for cancer immunotherapy

Tao Wu, Jing Chen, Kaixuan Diao, Guangshuai Wang, Jinyu Wang, Huizi Yao, Xue-Song Liu

Database, Volume 2023, 2023, baad041, https://doi.org/10.1093/database/baad041

GeniePool: genomic database with corresponding annotated samples based on a cloud data lake architecture

Noam Hadar, Grisha Weintraub, Ehud Gudes, Shlomi Dolev, Ohad S Birk

Database, Volume 2023, 2023, baad043, https://doi.org/10.1093/database/baad043

RNA-Chrom: a manually curated analytical database of RNA–chromatin interactome

G K Ryabykh, S V Kuznetsov, Y D Korostelev, A I Sigorskikh, A A Zharikova, A A Mironov

Database, Volume 2023, 2023, baad025, https://doi.org/10.1093/database/baad025

PETCH-DB: a Portal for Exploring Tissue-specific and Complex disease-associated 5-Hydroxymethylcytosines

Qinyun Cai, Zhou Zhang, Xiaolong Cui, Chang Zeng, Jiabin Cai, Jiajun Cai, Kai Wu, Xu Zhang, Yixiang Shi, Zoe Arvanitakis, Marc A Bissonnette, Brian C -H Chiu, Shi-Yuan Cheng, Chuan He, Wei Zhang

Database, Volume 2023, 2023, baad042, https://doi.org/10.1093/database/baad042

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VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants

Pietro Pinoli, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi

Database, Volume 2023, 2023, baad044, https://doi.org/10.1093/database/baad044

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PearMODB: a multiomics database for pear (Pyrus) genomics, genetics and breeding study

Jian Hu, Baisha Huang, Hao Yin, Kaijie Qi, Yuanyuan Jia, Zhihua Xie, Yuan Gao, Hongxiang Li, Qionghou Li, Zewen Wang, Ying Zou, Shaoling Zhang, Xin Qiao

Database, Volume 2023, 2023, baad050, https://doi.org/10.1093/database/baad050

CropGF: a comprehensive visual platform for crop gene family mining and analysis

Jingtian Xu, Can Zhu, Minzeng Su, Sida Li, Haoyu Chao, Ming Chen

Database, Volume 2023, 2023, baad051, https://doi.org/10.1093/database/baad051

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APDB: a database on air pollutant characterization and similarity prediction

Eva Viesi, Davide Stefano Sardina, Ugo Perricone, Rosalba Giugno

Database, Volume 2023, 2023, baad046, https://doi.org/10.1093/database/baad046

scBrainMap: a landscape for cell types and associated genetic markers in the brain

Yuhao Chi, Ruicheng Qi, Yue Zhou, Huige Tong, Hanbo Jin, Christoph W Turck, Wei-Hua Chen, Guang-Zhong Wang

Database, Volume 2023, 2023, baad035, https://doi.org/10.1093/database/baad035

BLAB2CancerKD: a knowledge graph database focusing on the association between lactic acid bacteria and cancer, but beyond

Yi Jing, Baiyang Feng, Jing Gao, Jin Li, Ganghui Zhou, Zhihong Sun, Yufei Wang

Database, Volume 2023, 2023, baad036, https://doi.org/10.1093/database/baad036

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PurificationDB: database of purification conditions for proteins

Olivia Garland, Mariia Radaeva, Mohit Pandey, Artem Cherkasov, Nada Lallous

Database, Volume 2023, 2023, baad016, https://doi.org/10.1093/database/baad016

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Assessing the use of supplementary materials to improve genomic variant discovery

Emilie Pasche, Anaïs Mottaz, Julien Gobeill, Pierre-André Michel, Déborah Caucheteur, Nona Naderi, Patrick Ruch

Database, Volume 2023, 2023, baad017, https://doi.org/10.1093/database/baad017

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PDC: a highly compact file format to store protein 3D coordinates

Chengxin Zhang, Anna Marie Pyle

Database, Volume 2023, 2023, baad018, https://doi.org/10.1093/database/baad018

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Semi-automatic translation of medicine usage data (in Dutch, free-text) from Lifelines COVID-19 questionnaires to ATC codes

Alexander J Kellmann, Pauline Lanting, Lude Franke, Esther J van Enckevort, Morris A Swertz

Database, Volume 2023, 2023, baad019, https://doi.org/10.1093/database/baad019

Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit

Nianhang Chen, Rong Zhang, Tao Zeng, Xuting Zhang, Ruibo Wu

Database, Volume 2023, 2023, baad020, https://doi.org/10.1093/database/baad020

CenhANCER: a comprehensive cancer enhancer database for primary tissues and cell lines

Zhi-Hui Luo, Meng-Wei Shi, Yuan Zhang, Dan-Yang Wang, Yi-Bo Tong, Xue-Ling Pan, ShanShan Cheng

Database, Volume 2023, 2023, baad022, https://doi.org/10.1093/database/baad022

The landscape of health disparities in the UK Biobank

Shashwat Deepali Nagar, I King Jordan, Leonardo Mariño-Ramírez

Database, Volume 2023, 2023, baad026, https://doi.org/10.1093/database/baad026

AI4FoodDB: a database for personalized e-Health nutrition and lifestyle through wearable devices and artificial intelligence

Sergio Romero-Tapiador, Blanca Lacruz-Pleguezuelos, Ruben Tolosana, Gala Freixer, Roberto Daza, Cristina M Fernández-Díaz, Elena Aguilar-Aguilar, Jorge Fernández-Cabezas, Silvia Cruz-Gil, Susana Molina, Maria Carmen Crespo, Teresa Laguna, Laura Judith Marcos-Zambrano, Ruben Vera-Rodriguez, Julian Fierrez, Ana Ramírez de Molina, Javier Ortega-Garcia, Isabel Espinosa-Salinas, Aythami Morales, Enrique Carrillo de Santa Pau

Database, Volume 2023, 2023, baad049, https://doi.org/10.1093/database/baad049

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Biomedical relation extraction with knowledge base–refined weak supervision

Wonjin Yoon, Sean Yi, Richard Jackson, Hyunjae Kim, Sunkyu Kim, Jaewoo Kang

Database, Volume 2023, 2023, baad054, https://doi.org/10.1093/database/baad054

The MetaGens algorithm for metagenomic database lossy compression and subject alignment

Gustavo Henrique Cervi, Cecilia Dias Flores, Claudia Elizabeth Thompson

Database, Volume 2023, 2023, baad053, https://doi.org/10.1093/database/baad053

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CBPDdb: a curated database of compounds derived from Coumarin–Benzothiazole–Pyrazole

Shailima Rampogu, Mohammed Rafi Shaik, Merajuddin Khan, Mujeeb Khan, Tae Hwan Oh, Baji Shaik

Database, Volume 2023, 2023, baad062, https://doi.org/10.1093/database/baad062

PolyQ Database—an integrated database on polyglutamine diseases

Bernardo Estevam, Carlos A Matos, Clévio Nóbrega

Database, Volume 2023, 2023, baad060, https://doi.org/10.1093/database/baad060

Building a large gene expression-cancer knowledge base with limited human annotations

Stefano Marchesin, Laura Menotti, Fabio Giachelle, Gianmaria Silvello, Omar Alonso

Database, Volume 2023, 2023, baad061, https://doi.org/10.1093/database/baad061

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BCEDB: a linear B-cell epitopes database for SARS-CoV-2

Chengzheng Tai, Hongjun Li, Jing Zhang

Database, Volume 2023, 2023, baad065, https://doi.org/10.1093/database/baad065

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Tissue-specific transcriptomes reveal potential mechanisms of microbiome heterogeneity in an ancient fish

Matt J Thorstensen, Alyssa M Weinrauch, William S Bugg, Ken M Jeffries, W Gary Anderson

Database, Volume 2023, 2023, baad055, https://doi.org/10.1093/database/baad055

TRGdb: a universal resource for the exploration of taxonomically restricted genes in bacteria

Andrzej Zielezinski, Wojciech Dobrychlop, Wojciech M Karlowski

Database, Volume 2023, 2023, baad058, https://doi.org/10.1093/database/baad058

The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study

Simona Panni, Kalpana Panneerselvam, Pablo Porras, Margaret Duesbury, Livia Perfetto, Luana Licata, Henning Hermjakob, Sandra Orchard

Database, Volume 2023, 2023, baad066, https://doi.org/10.1093/database/baad066

Fisheries data management systems in the NW Mediterranean: from data collection to web visualization

Jordi Ribera-Altimir, Gerard Llorach-Tó, Joan Sala-Coromina, Joan B Company, Eve Galimany

Database, Volume 2023, 2023, baad067, https://doi.org/10.1093/database/baad067

InCliniGene enables high-throughput and comprehensive in vivo clonal tracking toward clinical genomics data integration

Ivan Merelli, Stefano Beretta, Daniela Cesana, Alessandro Gennari, Fabrizio Benedicenti, Giulio Spinozzi, Daniele Cesini, Eugenio Montini, Daniele D’Agostino, Andrea Calabria

Database, Volume 2023, 2023, baad069, https://doi.org/10.1093/database/baad069

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Notes on the data quality of bibliographic records from the MEDLINE database

Robin Bramley, Stephen Howe, Haralambos Marmanis

Database, Volume 2023, 2023, baad070, https://doi.org/10.1093/database/baad070

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LeishMANIAdb: a comparative resource for Leishmania proteins

Gábor E Tusnády, András Zeke, Zsófia E Kálmán, Marie Fatoux, Sylvie Ricard-Blum, Toby J Gibson, Laszlo Dobson

Database, Volume 2023, 2023, baad074, https://doi.org/10.1093/database/baad074

OncoCTMiner: streamlining precision oncology trial matching via molecular profile analysis

Quan Xu, Yueyue Liu, Dawei Sun, Xiaoqian Huang, Feihong Li, JinCheng Zhai, Yang Li, Qiming Zhou, Niansong Qian, Beifang Niu

Database, Volume 2023, 2023, baad077, https://doi.org/10.1093/database/baad077

Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications

Shatabdi Sen, Margaret R Woodhouse, John L Portwood, II, Carson M Andorf

Database, Volume 2023, 2023, baad078, https://doi.org/10.1093/database/baad078

FooDrugs: a comprehensive food–drug interactions database with text documents and transcriptional data

Blanca Lacruz-Pleguezuelos, Oscar Piette, Marco Garranzo, David Pérez-Serrano, Jelena Milešević, Isabel Espinosa-Salinas, Ana Ramírez de Molina, Teresa Laguna, Enrique Carrillo de Santa Pau

Database, Volume 2023, 2023, baad075, https://doi.org/10.1093/database/baad075

PlantIntronDB: a database for plant introns that host functional elements

Weiping Wang, Jiming Hu, Han Li, Jun Yan, Xiaoyong Sun

Database, Volume 2023, 2023, baad082, https://doi.org/10.1093/database/baad082

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An online database for einkorn wheat to aid in gene discovery and functional genomics studies

Parva Kumar Sharma, Hanin Ibrahim Ahmed, Matthias Heuberger, Dal-Hoe Koo, Jesus Quiroz-Chavez, Laxman Adhikari, John Raupp, Stéphane Cauet, Nathalie Rodde, Charlotte Cravero, Caroline Callot, Inderjit Singh Yadav, Nagarajan Kathiresan, Naveenkumar Athiyannan, Ricardo H Ramirez-Gonzalez, Cristobal Uauy, Thomas Wicker, Michael Abrouk, Yong Q Gu … Vijay K Tiwari

Database, Volume 2023, 2023, baad079, https://doi.org/10.1093/database/baad079

Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations

Antonio Miranda-Escalada, Farrokh Mehryary, Jouni Luoma, Darryl Estrada-Zavala, Luis Gasco, Sampo Pyysalo, Alfonso Valencia, Martin Krallinger

Database, Volume 2023, 2023, baad080, https://doi.org/10.1093/database/baad080

LncPCD: a manually curated database of experimentally supported associations between lncRNA-mediated programmed cell death and diseases

Ni He, Danyang Li, Fanfan Xu, Jingnan Jin, Lifang Li, Liting Tian, Biying Chen, Xiaoju Li, Shangwei Ning, Lihua Wang, Jianjian Wang

Database, Volume 2023, 2023, baad087, https://doi.org/10.1093/database/baad087

aSynPEP-DB: a database of biogenic peptides for inhibiting α-synuclein aggregation

Carlos Pintado-Grima, Oriol Bárcenas, Valentín Iglesias, Jaime Santos, Zoe Manglano-Artuñedo, Irantzu Pallarès, Michał Burdukiewicz, Salvador Ventura

Database, Volume 2023, 2023, baad084, https://doi.org/10.1093/database/baad084

Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium

Jennifer L Clarke, Laurel D Cooper, Monica F Poelchau, Tanya Z Berardini, Justin Elser, Andrew D Farmer, Stephen Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T Nelson, Rie Sadohara, Peter Selby, Anne E Thessen, Brandon Whitehead, Taner Z Sen

Database, Volume 2023, 2023, baad076, https://doi.org/10.1093/database/baad076

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Managing and monitoring a pandemic: showcasing a practical approach for the genomic surveillance of SARS-CoV-2

Mateusz Jundzill, Riccardo Spott, Mara Lohde, Martin Hölzer, Adrian Viehweger, Christian Brandt

Database, Volume 2023, 2023, baad071, https://doi.org/10.1093/database/baad071

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DISPEL: database for ascertaining the best medicinal plants to cure human diseases

Kavya Singh, Harshit Maurya, Parthasarathi Singh, Pujarani Panda, Amit Kumar Behera, Arshad Jamal, Ganesh Eslavath, Somesh Mohapatra, Harsh Chauhan, Deepak Sharma

Database, Volume 2023, 2023, baad073, https://doi.org/10.1093/database/baad073

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Design of the formalized and integrated Alzheimer’s Disease Ontology and its application in retrieving textual data via text mining

Bide Zhang, Vanessa Lage-Rupprecht, Philipp Wegner, Astghik Sargsyan, Stephan Gebel, Marc Jacobs, Jürgen Klein, Martin Hofmann-Apitius, Alpha Tom Kodamullil

Database, Volume 2023, 2023, baad085, https://doi.org/10.1093/database/baad085

Artificial Intelligence-based database for prediction of protein structure and their alterations in ocular diseases

Ling-Ping Cen, Tsz Kin Ng, Jie Ji, Jian-Wei Lin, Yao Yao, Rucui Yang, Geng Dong, Yingjie Cao, Chongbo Chen, Shi-Qi Yao, Wen-Ying Wang, Zijing Huang, Kunliang Qiu, Chi Pui Pang, Qingping Liu, Mingzhi Zhang

Database, Volume 2023, 2023, baad083, https://doi.org/10.1093/database/baad083

SplicingLore: a web resource for studying the regulation of cassette exons by human splicing factors

Hélène Polvèche, Jessica Valat, Nicolas Fontrodona, Audrey Lapendry, Valentine Clerc, Stéphane Janczarski, Franck Mortreux, Didier Auboeuf, Cyril F Bourgeois

Database, Volume 2023, 2023, baad091, https://doi.org/10.1093/database/baad091

Review

New approaches in developing medicinal herbs databases

Zahra Fathifar, Leila R Kalankesh, Alireza Ostadrahimi, Reza Ferdousi

Database, Volume 2023, 2023, baac110, https://doi.org/10.1093/database/baac110

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Review of databases for experimentally validated human microRNA–mRNA interactions

Dorian Kariuki, Kesava Asam, Bradley E Aouizerat, Kimberly A Lewis, Jose C Florez, Elena Flowers

Database, Volume 2023, 2023, baad014, https://doi.org/10.1093/database/baad014

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Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences

Cecilia H Deng, Sushma Naithani, Sunita Kumari, Irene Cobo-Simón, Elsa H Quezada-Rodríguez, Maria Skrabisova, Nick Gladman, Melanie J Correll, Akeem Babatunde Sikiru, Olusola O Afuwape, Annarita Marrano, Ines Rebollo, Wentao Zhang, Sook Jung

Database, Volume 2023, 2023, baad088, https://doi.org/10.1093/database/baad088

Technical report

WASP: the World Archives of Species Perception

Tuan Nguyen, Robert Malina, Ilias Mokas, Antonis Papakonstantinou, Orestes Polyzos, Maarten P M Vanhove

Database, Volume 2023, 2023, baad003, https://doi.org/10.1093/database/baad003

Preproject ‘Swiss Virtual Natural History Collection’

Ana Petrus, Tobias Wildi, Stefanie Müller

Database, Volume 2023, 2023, baad072, https://doi.org/10.1093/database/baad072

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Database tool

Improved insights into the SABIO-RK database via visualization

Dorotea Dudaš, Ulrike Wittig, Maja Rey, Andreas Weidemann, Wolfgang Müller

Database, Volume 2023, 2023, baad011, https://doi.org/10.1093/database/baad011

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SyntenyViewer: a comparative genomics-driven translational research tool

Raphael Flores, Cécile Huneau, Laura Burlot, Mathilde Lainé, Erik Kimmel, Cyril Pommier, Michael Alaux, Anne-Françoise Adam-Blondon, Caroline Pont, Hadi Quesneville, Jerome Salse

Database, Volume 2023, 2023, baad027, https://doi.org/10.1093/database/baad027

MantaID: a machine learning–based tool to automate the identification of biological database IDs

Zhengpeng Zeng, Jiamin Hu, Miyuan Cao, Bingbing Li, Xiting Wang, Feng Yu, Longfei Mao

Database, Volume 2023, 2023, baad028, https://doi.org/10.1093/database/baad028

Integrated ACMG-approved genes and ICD codes for the translational research and precision medicine

Raghunandan Wable, Achuth Suresh Nair, Anirudh Pappu, Widnie Pierre-Louis, Habiba Abdelhalim, Khushbu Patel, Dinesh Mendhe, Shreyas Bolla, Sahil Mittal, Zeeshan Ahmed

Database, Volume 2023, 2023, baad033, https://doi.org/10.1093/database/baad033

ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database

Pauline Brochet, Jean-Christophe Mouren, Laurent Hannouche, Fabrice Lopez, Benoit Ballester, Edecio Cunha-Neto, Lionel Spinelli, Christophe Chevillard

Database, Volume 2023, 2023, baad037, https://doi.org/10.1093/database/baad037

CIGAF—a database and interactive platform for insect-associated trichomycete fungi

Shalini Chaudhary, Yibing Wu, Doug Strongman, Yan Wang

Database, Volume 2023, 2023, baad038, https://doi.org/10.1093/database/baad038

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MineProt: a stand-alone server for structural proteome curation

Yunchi Zhu, Chengda Tong, Zuohan Zhao, Zuhong Lu

Database, Volume 2023, 2023, Page 0, https://doi.org/10.1093/database/baad059

CCIDB: a manually curated cell–cell interaction database with cell context information

Jin Young Noh, Hae In Lee, Ji-Hye Choi, Seong-Ho Cho, Yoon Hui Yi, Ji Hyun Lim, Eun Been Myung, Ye Ju Shin, Hyo Jin Shin, Hyun Goo Woo

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AVPCD: a plant-derived medicine database of antiviral phytochemicals for cancer, Covid-19, malaria and HIV

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Database, Volume 2023, 2023, baad056, https://doi.org/10.1093/database/baad056

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