Volume 2019, 2019
EnhancerDB: a resource of transcriptional regulation in the context of enhancers
Database, Volume 2019, 2019, bay141, https://doi.org/10.1093/database/bay141
Progress in the study of genome size evolution in Asteraceae: analysis of the last update
Database, Volume 2019, 2019, baz098, https://doi.org/10.1093/database/baz098
RumimiR: a detailed microRNA database focused on ruminant species
Database, Volume 2019, 2019, baz099, https://doi.org/10.1093/database/baz099
DeepScreening: a deep learning-based screening web server for accelerating drug discovery
Database, Volume 2019, 2019, baz104, https://doi.org/10.1093/database/baz104
SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines)
Database, Volume 2019, 2019, baz111, https://doi.org/10.1093/database/baz111
RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases
Database, Volume 2019, 2019, baz112, https://doi.org/10.1093/database/baz112
FoodBase corpus: a new resource of annotated food entities
Database, Volume 2019, 2019, baz121, https://doi.org/10.1093/database/baz121
PCIR: a database of Plant Chloroplast Inverted Repeats
Database, Volume 2019, 2019, baz127, https://doi.org/10.1093/database/baz127
MIRKB: a myocardial infarction risk knowledge base
Database, Volume 2019, 2019, baz125, https://doi.org/10.1093/database/baz125
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps
Database, Volume 2019, 2019, baz100, https://doi.org/10.1093/database/baz100
Enabling semantic queries across federated bioinformatics databases
Database, Volume 2019, 2019, baz106, https://doi.org/10.1093/database/baz106
RPGeNet v2.0: expanding the universe of retinal disease gene interactions network
Database, Volume 2019, 2019, baz120, https://doi.org/10.1093/database/baz120
PMBD: a Comprehensive Plastics Microbial Biodegradation Database
Database, Volume 2019, 2019, baz119, https://doi.org/10.1093/database/baz119
ODNA: a manually curated database of noncoding RNAs associated with orthopedics
Database, Volume 2019, 2019, baz126, https://doi.org/10.1093/database/baz126
Machine learning approach to literature mining for the genetics of complex diseases
Database, Volume 2019, 2019, baz124, https://doi.org/10.1093/database/baz124
Reactome and ORCID—fine-grained credit attribution for community curation
Database, Volume 2019, 2019, baz123, https://doi.org/10.1093/database/baz123
NeoPeptide: an immunoinformatic database of T-cell-defined neoantigens
Database, Volume 2019, 2019, baz128, https://doi.org/10.1093/database/baz128
Improved standardization of transcribed digital specimen data
Database, Volume 2019, 2019, baz129, https://doi.org/10.1093/database/baz129
GenoSurf: metadata driven semantic search system for integrated genomic datasets
Database, Volume 2019, 2019, baz132, https://doi.org/10.1093/database/baz132
UPObase: an online database of unspecific peroxygenases
Database, Volume 2019, 2019, baz122, https://doi.org/10.1093/database/baz122
The human DEPhOsphorylation Database DEPOD: 2019 update
Database, Volume 2019, 2019, baz133, https://doi.org/10.1093/database/baz133
Mesophotic.org: a repository for scientific information on mesophotic ecosystems
Database, Volume 2019, 2019, baz140, https://doi.org/10.1093/database/baz140
SGID: a comprehensive and interactive database of the silkworm
Database, Volume 2019, 2019, baz134, https://doi.org/10.1093/database/baz134
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
Database, Volume 2019, 2019, baz135, https://doi.org/10.1093/database/baz135
The COMPARE Data Hubs
Database, Volume 2019, 2019, baz136, https://doi.org/10.1093/database/baz136
Original Article
NutriGenomeDB: a nutrigenomics exploratory and analytical platform
Database, Volume 2019, 2019, baz097, https://doi.org/10.1093/database/baz097
ProtMiscuity: a database of promiscuous proteins
Database, Volume 2019, 2019, baz103, https://doi.org/10.1093/database/baz103
RiceRelativesGD: a genomic database of rice relatives for rice research
Database, Volume 2019, 2019, baz110, https://doi.org/10.1093/database/baz110
CDEK: Clinical Drug Experience Knowledgebase
Database, Volume 2019, 2019, baz087, https://doi.org/10.1093/database/baz087
PICEAdatabase: a web database for Picea omics and phenotypic information
Database, Volume 2019, 2019, baz089, https://doi.org/10.1093/database/baz089
An effective biomedical data migration tool from resource description framework to JSON
Database, Volume 2019, 2019, baz088, https://doi.org/10.1093/database/baz088
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases
Database, Volume 2019, 2019, baz077, https://doi.org/10.1093/database/baz077
IRAM: virus capsid database and analysis resource
Database, Volume 2019, 2019, baz079, https://doi.org/10.1093/database/baz079
MycoResistance: a curated resource of drug resistance molecules in Mycobacteria
Database, Volume 2019, 2019, baz074, https://doi.org/10.1093/database/baz074
Oomycete Gene Table: an online database for comparative genomic analyses of the oomycete microorganisms
Database, Volume 2019, 2019, baz082, https://doi.org/10.1093/database/baz082
PRRDB 2.0: a comprehensive database of pattern-recognition receptors and their ligands
Database, Volume 2019, 2019, baz076, https://doi.org/10.1093/database/baz076
MolMeDB: Molecules on Membranes Database
Database, Volume 2019, 2019, baz078, https://doi.org/10.1093/database/baz078
SeQuery: an interactive graph database for visualizing the GPCR superfamily
Database, Volume 2019, 2019, baz073, https://doi.org/10.1093/database/baz073
MepmiRDB: a medicinal plant microRNA database
Database, Volume 2019, 2019, baz070, https://doi.org/10.1093/database/baz070
Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae
Database, Volume 2019, 2019, baz069, https://doi.org/10.1093/database/baz069
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
Database, Volume 2019, 2019, baz068, https://doi.org/10.1093/database/baz068
SpinachBase: a central portal for spinach genomics
Database, Volume 2019, 2019, baz072, https://doi.org/10.1093/database/baz072
Endometriosis Knowledgebase: a gene-based resource on endometriosis
Database, Volume 2019, 2019, baz062, https://doi.org/10.1093/database/baz062
Chickspress: a resource for chicken gene expression
Database, Volume 2019, 2019, baz058, https://doi.org/10.1093/database/baz058
Chemical–protein interaction extraction via contextualized word representations and multihead attention
Database, Volume 2019, 2019, baz054, https://doi.org/10.1093/database/baz054
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
Database, Volume 2019, 2019, baz047, https://doi.org/10.1093/database/baz047
CANCROX: a cross-species cancer therapy database
Database, Volume 2019, 2019, baz044, https://doi.org/10.1093/database/baz044
ChlamBase: a curated model organism database for the Chlamydia research community
Database, Volume 2019, 2019, baz041, https://doi.org/10.1093/database/baz041
The Natural History Museum Data Portal
Database, Volume 2019, 2019, baz038, https://doi.org/10.1093/database/baz038
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data
Database, Volume 2019, 2019, baz046, https://doi.org/10.1093/database/baz046
A dimensional warehouse for integrating operational data from clinical trials
Database, Volume 2019, 2019, baz039, https://doi.org/10.1093/database/baz039
Quantitative phenotype analysis to identify, validate and compare rat disease models
Database, Volume 2019, 2019, baz037, https://doi.org/10.1093/database/baz037
Building deep learning models for evidence classification from the open access biomedical literature
Database, Volume 2019, 2019, baz034, https://doi.org/10.1093/database/baz034
Curating gene sets: challenges and opportunities for integrative analysis
Database, Volume 2019, 2019, baz036, https://doi.org/10.1093/database/baz036
A late-binding, distributed, NoSQL warehouse for integrating patient data from clinical trials
Database, Volume 2019, 2019, baz032, https://doi.org/10.1093/database/baz032
MSGP: the first database of the protein components of the mammalian stress granules
Database, Volume 2019, 2019, baz031, https://doi.org/10.1093/database/baz031
YESdb: integrative analysis of environmental stress in yeast
Database, Volume 2019, 2019, baz023, https://doi.org/10.1093/database/baz023
Ontology based text mining of gene-phenotype associations: application to candidate gene prediction
Database, Volume 2019, 2019, baz019, https://doi.org/10.1093/database/baz019
Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena
Database, Volume 2019, 2019, baz029, https://doi.org/10.1093/database/baz029
PIRSitePredict for protein functional site prediction using position-specific rules
Database, Volume 2019, 2019, baz026, https://doi.org/10.1093/database/baz026
SuCComBase: a manually curated repository of plant sulfur-containing compounds
Database, Volume 2019, 2019, baz021, https://doi.org/10.1093/database/baz021
EnDisease: a manually curated database for enhancer-disease associations
Database, Volume 2019, 2019, baz020, https://doi.org/10.1093/database/baz020
FairBase: a comprehensive database of fungal A-to-I RNA editing
Database, Volume 2019, 2019, baz018, https://doi.org/10.1093/database/baz018
A cross-source, system-agnostic solution for clinical data review
Database, Volume 2019, 2019, baz017, https://doi.org/10.1093/database/baz017
Integrated curation and data mining for disease and phenotype models at the Rat Genome Database
Database, Volume 2019, 2019, baz014, https://doi.org/10.1093/database/baz014
A scalable, aggregated genotypic–phenotypic database for human disease variation
Database, Volume 2019, 2019, baz013, https://doi.org/10.1093/database/baz013
The radish genome database (RadishGD): an integrated information resource for radish genomics
Database, Volume 2019, 2019, baz009, https://doi.org/10.1093/database/baz009
Integration of macromolecular complex data into the Saccharomyces Genome Database
Database, Volume 2019, 2019, baz008, https://doi.org/10.1093/database/baz008
Annotation of gene product function from high-throughput studies using the Gene Ontology
Database, Volume 2019, 2019, baz007, https://doi.org/10.1093/database/baz007
ZincBind—the database of zinc binding sites
Database, Volume 2019, 2019, baz006, https://doi.org/10.1093/database/baz006
One tool to find them all: a case of data integration and querying in a distributed LIMS platform
Database, Volume 2019, 2019, baz004, https://doi.org/10.1093/database/baz004
Automatic identification of relevant chemical compounds from patents
Database, Volume 2019, 2019, baz001, https://doi.org/10.1093/database/baz001
Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase
Database, Volume 2019, 2019, bay144, https://doi.org/10.1093/database/bay144
RRMdb—an evolutionary-oriented database of RNA recognition motif sequences
Database, Volume 2019, 2019, bay148, https://doi.org/10.1093/database/bay148
RAEdb: a database of enhancers identified by high-throughput reporter assays
Database, Volume 2019, 2019, bay140, https://doi.org/10.1093/database/bay140
Enhanced taxonomy annotation of antiviral activity data from ChEMBL
Database, Volume 2019, 2019, bay139, https://doi.org/10.1093/database/bay139
TogoGenome/TogoStanza: modularized Semantic Web genome database
Database, Volume 2019, 2019, bay132, https://doi.org/10.1093/database/bay132
Combining relation extraction with function detection for BEL statement extraction
Database, Volume 2019, 2019, bay133, https://doi.org/10.1093/database/bay133
Database Update
YeasTSS: an integrative web database of yeast transcription start sites
Database, Volume 2019, 2019, baz048, https://doi.org/10.1093/database/baz048
Update on cpnDB: a reference database of chaperonin sequences
Database, Volume 2019, 2019, baz033, https://doi.org/10.1093/database/baz033
Increased interactivity and improvements to the GigaScience database, GigaDB
Database, Volume 2019, 2019, baz016, https://doi.org/10.1093/database/baz016
ImmunoSPdb: an archive of immunosuppressive peptides
Database, Volume 2019, 2019, baz012, https://doi.org/10.1093/database/baz012
LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs
Database, Volume 2019, 2019, baz011, https://doi.org/10.1093/database/baz011
ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
Database, Volume 2019, 2019, bay142, https://doi.org/10.1093/database/bay142
The integrated National NeuroAIDS Tissue Consortium database: a rich platform for neuroHIV research
Database, Volume 2019, 2019, bay134, https://doi.org/10.1093/database/bay134
Database Tool
CasPDB: an integrated and annotated database for Cas proteins from bacteria and archaea
Database, Volume 2019, 2019, baz093, https://doi.org/10.1093/database/baz093
piRDisease v1.0: a manually curated database for piRNA associated diseases
Database, Volume 2019, 2019, baz052, https://doi.org/10.1093/database/baz052
A web-based tool for the prediction of rice transcription factor function
Database, Volume 2019, 2019, baz061, https://doi.org/10.1093/database/baz061
CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress
Database, Volume 2019, 2019, baz053, https://doi.org/10.1093/database/baz053
PlantMP: a database for moonlighting plant proteins
Database, Volume 2019, 2019, baz050, https://doi.org/10.1093/database/baz050
PKAD: a database of experimentally measured pKa values of ionizable groups in proteins
Database, Volume 2019, 2019, baz024, https://doi.org/10.1093/database/baz024
CircFunBase: a database for functional circular RNAs
Database, Volume 2019, 2019, baz003, https://doi.org/10.1093/database/baz003
TP53LNC-DB, the database of lncRNAs in the p53 signalling network
Database, Volume 2019, 2019, bay136, https://doi.org/10.1093/database/bay136
AtFusionDB: a database of fusion transcripts in Arabidopsis thaliana
Database, Volume 2019, 2019, bay135, https://doi.org/10.1093/database/bay135
Perspective/Opinion
Involving community in genes and pathway curation
Database, Volume 2019, 2019, bay146, https://doi.org/10.1093/database/bay146
Technical Report
A manual corpus of annotated main findings of clinical case reports
Database, Volume 2019, 2019, bay143, https://doi.org/10.1093/database/bay143
Corrigendum
ChlamBase: a curated model organism database for the Chlamydia research community
Database, Volume 2019, 2019, baz091, https://doi.org/10.1093/database/baz091
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs
Database, Volume 2019, 2019, baz090, https://doi.org/10.1093/database/baz090
