Volume 2010, 2010

Original Articles

The annotation and the usage of scientific databases could be improved with public issue tracker software
Giovanni Marco Dall'Olio and others
Database, Volume 2010, 2010, baq035, https://doi.org/10.1093/database/baq035
Literature curation of protein interactions: measuring agreement across major public databases
Andrei L. Turinsky and others
Database, Volume 2010, 2010, baq026, https://doi.org/10.1093/database/baq026
Damming the genomic data flood using a comprehensive analysis and storage data structure
Marc Bouffard and others
Database, Volume 2010, 2010, baq029, https://doi.org/10.1093/database/baq029
GATMD: γ-Aminobutyric Acid Transporter Mutagenesis Database
Cynthia M. Anderson and others
Database, Volume 2010, 2010, baq028, https://doi.org/10.1093/database/baq028
A curated online resource for SOX10 and pigment cell molecular genetic pathways
Laura L. Baxter and others
Database, Volume 2010, 2010, baq025, https://doi.org/10.1093/database/baq025
EuroDia: a beta-cell gene expression resource
Robin Liechti and others
Database, Volume 2010, 2010, baq024, https://doi.org/10.1093/database/baq024
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence
Brian Turner and others
Database, Volume 2010, 2010, baq023, https://doi.org/10.1093/database/baq023
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
Venkata P. Satagopam and others
Database, Volume 2010, 2010, baq019, https://doi.org/10.1093/database/baq019
The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
Tsute Chen and others
Database, Volume 2010, 2010, baq013, https://doi.org/10.1093/database/baq013
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences
Damian Smedley and others
Database, Volume 2010, 2010, baq014, https://doi.org/10.1093/database/baq014
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions
Tatiana V. Karpinets and others
Database, Volume 2010, 2010, baq012, https://doi.org/10.1093/database/baq012
PROFESS: a PROtein Function, Evolution, Structure and Sequence database
Thomas Triplet and others
Database, Volume 2010, 2010, baq011, https://doi.org/10.1093/database/baq011
Mouse Resource Browser—a database of mouse databases
Michael Zouberakis and others
Database, Volume 2010, 2010, baq010, https://doi.org/10.1093/database/baq010
PDBWiki: added value through community annotation of the Protein Data Bank
Henning Stehr and others
Database, Volume 2010, 2010, baq009, https://doi.org/10.1093/database/baq009
Choosing a genome browser for a Model Organism Database: surveying the Maize community
Taner Z. Sen and others
Database, Volume 2010, 2010, baq007, https://doi.org/10.1093/database/baq007
CGDSNPdb: a database resource for error-checked and imputed mouse SNPs
Lucie N. Hutchins and others
Database, Volume 2010, 2010, baq008, https://doi.org/10.1093/database/baq008
An advanced web query interface for biological databases
Mario Latendresse and Peter D. Karp
Database, Volume 2010, 2010, baq006, https://doi.org/10.1093/database/baq006
BrainTrap: a database of 3D protein expression patterns in the Drosophila brain
Seymour Knowles-Barley and others
Database, Volume 2010, 2010, baq005, https://doi.org/10.1093/database/baq005
TRedD—A database for tandem repeats over the edit distance
Dina Sokol and Firat Atagun
Database, Volume 2010, 2010, baq003, https://doi.org/10.1093/database/baq003
OpenFluDB, a database for human and animal influenza virus
Robin Liechti and others
Database, Volume 2010, 2010, baq004, https://doi.org/10.1093/database/baq004
Meeting report: a workshop on Best Practices in Genome Annotation
Ramana Madupu and others
Database, Volume 2010, 2010, baq001, https://doi.org/10.1093/database/baq001
Gene-oriented ortholog database: a functional comparison platform for orthologous loci
Meng-Ru Ho and others
Database, Volume 2010, 2010, baq002, https://doi.org/10.1093/database/baq002
PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae
Chris Stark and others
Database, Volume 2010, 2010, bap026, https://doi.org/10.1093/database/bap026
Phenol-Explorer: an online comprehensive database on polyphenol contents in foods
V. Neveu and others
Database, Volume 2010, 2010, bap024, https://doi.org/10.1093/database/bap024

Database Tool

Bookshelf: a simple curation system for the storage of biomolecular simulation data
Shabana Vohra and others
Database, Volume 2010, 2010, baq033, https://doi.org/10.1093/database/baq033
IGVBrowser–a genomic variation resource from diverse Indian populations
Ankita Narang and others
Database, Volume 2010, 2010, baq022, https://doi.org/10.1093/database/baq022
The systematic annotation of the three main GPCR families in Reactome
Bijay Jassal and others
Database, Volume 2010, 2010, baq018, https://doi.org/10.1093/database/baq018
Varietas: a functional variation database portal
Jussi Paananen and others
Database, Volume 2010, 2010, baq016, https://doi.org/10.1093/database/baq016
CyanoClust: comparative genome resources of cyanobacteria and plastids
Naobumi V. Sasaki and Naoki Sato
Database, Volume 2010, 2010, bap025, https://doi.org/10.1093/database/bap025

Review

Human variation databases
Jan Küntzer and others
Database, Volume 2010, 2010, baq015, https://doi.org/10.1093/database/baq015

Database Update

AthaMap-assisted transcription factor target gene identification in Arabidopsis thaliana
Lorenz Bülow and others
Database, Volume 2010, 2010, baq034, https://doi.org/10.1093/database/baq034
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle
Aurélie Lardenois and others
Database, Volume 2010, 2010, baq030, https://doi.org/10.1093/database/baq030
GeneCards Version 3: the human gene integrator
Marilyn Safran and others
Database, Volume 2010, 2010, baq020, https://doi.org/10.1093/database/baq020
HyperCAT: an extension of the SuperCAT database for global multi-scheme and multi-datatype phylogenetic analysis of the Bacillus cereus group population
Nicolas J. Tourasse and others
Database, Volume 2010, 2010, baq017, https://doi.org/10.1093/database/baq017

Tutorial

PDBj Mine: design and implementation of relational database interface for Protein Data Bank Japan
Akira R. Kinjo and others
Database, Volume 2010, 2010, baq021, https://doi.org/10.1093/database/baq021

Front Matter/Back Matter

DATABASE Editorial Board 2010
Database, Volume 2010, 2010, baq032, https://doi.org/10.1093/database/baq032
All issues